This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1fp7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1fp7" size="450" color="white" frame="true" align="right" spinBox="true" caption="1fp7, resolution 3.20&Aring;" /> '''MONOVALENT CATION BI...)
Current revision (11:15, 27 March 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1fp7.gif|left|200px]]<br /><applet load="1fp7" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1fp7, resolution 3.20&Aring;" />
 
-
'''MONOVALENT CATION BINDING SITES IN N10-FORMYLTETRAHYDROFOLATE SYNTHETASE FROM MOORELLA THERMOACETICA'''<br />
 
-
==Overview==
+
==MONOVALENT CATION BINDING SITES IN N10-FORMYLTETRAHYDROFOLATE SYNTHETASE FROM MOORELLA THERMOACETICA==
-
Formyltetrahydrofolate synthetase (FTHFS) from the thermophilic, homoacetogen, Moorella thermoacetica, has an optimum temperature for, activity of 55-60 degrees C and requires monovalent cations for both, optimal activity and stabilization of tetrameric structure at higher, temperatures. The crystal structures of complexes of FTHFS with cesium and, potassium ions were examined and monovalent cation binding positions, identified. Unexpectedly, NH(4)(+) and K(+), both of which are strongly, activating ions, bind at a different site than a moderately activating, ion, Cs(+), does. Neither binding site is located in the active site. The, sites are 7 A apart, but in each of them, the side chain of Glu 98, which, is conserved in all known bacterial FTHFS sequences, participates in metal, ion binding. Other ligands in the Cs(+) binding site are four oxygen atoms, of main chain carbonyls and water molecules. The K(+) and NH(4)(+) binding, site includes the carboxylate of Asp132 in addition to Glu98. Mutant, FTHFS's (E98Q, E98D, and E98S) were obtained and analyzed using, differential scanning calorimetry to examine the effect of these mutations, on the thermostability of the enzyme with and without added K(+) ions. The, addition of 0.2 M K(+) ions to the wild-type enzyme resulted in a 10, degrees C increase in the thermal denaturation temperature. No significant, increase was observed in E98D or E98S. The lack of a significant effect of, monovalent cations on the stability of E98D and E98S indicates that this, alteration of the binding site eliminates cation binding. The thermal, denaturation temperature of E98Q was 3 degrees C higher than that of the, wild-type enzyme in the absence of the cation, indicating that the removal, of the unbalanced, buried charge of Glu98 stabilizes the enzyme. These, results confirm that Glu98 is a crucial residue in the interaction of, monovalent cations with FTHFS.
+
<StructureSection load='1fp7' size='340' side='right'caption='[[1fp7]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==About this Structure==
+
<table><tr><td colspan='2'>[[1fp7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Moorella_thermoacetica Moorella thermoacetica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FP7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FP7 FirstGlance]. <br>
-
1FP7 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Moorella_thermoacetica Moorella thermoacetica] with SO4 and K as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Formate--tetrahydrofolate_ligase Formate--tetrahydrofolate ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.4.3 6.3.4.3] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1FP7 OCA].
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
==Reference==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fp7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fp7 OCA], [https://pdbe.org/1fp7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fp7 RCSB], [https://www.ebi.ac.uk/pdbsum/1fp7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fp7 ProSAT]</span></td></tr>
-
Cation binding and thermostability of FTHFS monovalent cation binding sites and thermostability of N10-formyltetrahydrofolate synthetase from Moorella thermoacetica., Radfar R, Leaphart A, Brewer JM, Minor W, Odom JD, Dunlap RB, Lovell CR, Lebioda L, Biochemistry. 2000 Nov 28;39(47):14481-6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11087401 11087401]
+
</table>
-
[[Category: Formate--tetrahydrofolate ligase]]
+
== Function ==
 +
[https://www.uniprot.org/uniprot/FTHS_MOOTH FTHS_MOOTH]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fp/1fp7_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fp7 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Moorella thermoacetica]]
[[Category: Moorella thermoacetica]]
-
[[Category: Single protein]]
+
[[Category: Brewer JM]]
-
[[Category: Brewer, J.M.]]
+
[[Category: Leaphart A]]
-
[[Category: Leaphart, A.]]
+
[[Category: Minor W]]
-
[[Category: Minor, W.]]
+
[[Category: Odom JD]]
-
[[Category: Odom, J.D.]]
+
[[Category: Radfar R]]
-
[[Category: Radfar, R.]]
+
-
[[Category: K]]
+
-
[[Category: SO4]]
+
-
[[Category: monovalent cation]]
+
-
[[Category: tetramer]]
+
-
[[Category: thermostable]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 15:06:51 2007''
+

Current revision

MONOVALENT CATION BINDING SITES IN N10-FORMYLTETRAHYDROFOLATE SYNTHETASE FROM MOORELLA THERMOACETICA

PDB ID 1fp7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1fp7"
Personal tools