This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1fnn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:16, 7 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1fnn.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF CDC6P FROM PYROBACULUM AEROPHILUM==
-
The line below this paragraph, containing "STRUCTURE_1fnn", creates the "Structure Box" on the page.
+
<StructureSection load='1fnn' size='340' side='right'caption='[[1fnn]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1fnn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrobaculum_aerophilum Pyrobaculum aerophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FNN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FNN FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
{{STRUCTURE_1fnn| PDB=1fnn | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fnn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fnn OCA], [https://pdbe.org/1fnn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fnn RCSB], [https://www.ebi.ac.uk/pdbsum/1fnn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fnn ProSAT]</span></td></tr>
-
 
+
</table>
-
===CRYSTAL STRUCTURE OF CDC6P FROM PYROBACULUM AEROPHILUM===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q8ZYK1_PYRAE Q8ZYK1_PYRAE] Involved in regulation of DNA replication (By similarity).[HAMAP-Rule:MF_01407]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_11030343}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 11030343 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fn/1fnn_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_11030343}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1FNN is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrobaculum_aerophilum Pyrobaculum aerophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FNN OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fnn ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control., Liu J, Smith CL, DeRyckere D, DeAngelis K, Martin GS, Berger JM, Mol Cell. 2000 Sep;6(3):637-48. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11030343 11030343]
+
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pyrobaculum aerophilum]]
[[Category: Pyrobaculum aerophilum]]
-
[[Category: Single protein]]
+
[[Category: Berger JM]]
-
[[Category: Berger, J M.]]
+
[[Category: DeAngelis K]]
-
[[Category: DeAngelis, K.]]
+
[[Category: DeRyckere D]]
-
[[Category: DeRyckere, D.]]
+
[[Category: Liu J]]
-
[[Category: Liu, J.]]
+
[[Category: Martin GS]]
-
[[Category: Martin, G S.]]
+
[[Category: Smith CL]]
-
[[Category: Smith, C L.]]
+
-
[[Category: Aaa protein]]
+
-
[[Category: Cdc18]]
+
-
[[Category: Cdc6]]
+
-
[[Category: Cell cycle control factor]]
+
-
[[Category: Dna replication initation factor]]
+
-
[[Category: Orc1]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 03:37:51 2008''
+

Current revision

CRYSTAL STRUCTURE OF CDC6P FROM PYROBACULUM AEROPHILUM

PDB ID 1fnn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1fnn"
Personal tools