7tim

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(New page: 200px<br /><applet load="7tim" size="450" color="white" frame="true" align="right" spinBox="true" caption="7tim, resolution 1.9&Aring;" /> '''STRUCTURE OF THE TRIO...)
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[[Image:7tim.gif|left|200px]]<br /><applet load="7tim" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="7tim, resolution 1.9&Aring;" />
 
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'''STRUCTURE OF THE TRIOSEPHOSPHATE ISOMERASE-PHOSPHOGLYCOLOHYDROXAMATE COMPLEX: AN ANALOGUE OF THE INTERMEDIATE ON THE REACTION PATHWAY'''<br />
 
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==Overview==
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==STRUCTURE OF THE TRIOSEPHOSPHATE ISOMERASE-PHOSPHOGLYCOLOHYDROXAMATE COMPLEX: AN ANALOGUE OF THE INTERMEDIATE ON THE REACTION PATHWAY==
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The glycolytic enzyme triosephosphate isomerase (TIM) catalyzes the, interconversion of the three-carbon sugars dihydroxyacetone phosphate, (DHAP) and D-glyceraldehyde 3-phosphate (GAP) at a rate limited by the, diffusion of substrate to the enzyme. We have solved the three-dimensional, structure of TIM complexed with a reactive intermediate analogue, phosphoglycolohydroxamate (PGH), at 1.9-A resolution and have refined the, structure to an R-factor of 18%. Analysis of the refined structure reveals, the geometry of the active-site residues and the interactions they make, with the inhibitor and, by analogy, the substrates. The structure is, consistent with an acid-base mechanism in which the carboxylate of Glu-165, abstracts a proton from carbon while His-95 donates a proton to oxygen to, form an enediol (or enediolate) intermediate. The conformation of the, bound substrate stereoelectronically favors proton transfer from substrate, carbon to the syn orbital of Glu-165. The crystal structure suggests that, His-95 is neutral rather than cationic in the ground state and therefore, would have to function as an imidazole acid instead of the usual, imidazolium. Lys-12 is oriented so as to polarize the substrate oxygens by, hydrogen bonding and/or electrostatic interaction, providing stabilization, for the charged transition state. Asn-10 may play a similar role.
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<StructureSection load='7tim' size='340' side='right'caption='[[7tim]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[7tim]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7TIM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7TIM FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PGH:PHOSPHOGLYCOLOHYDROXAMIC+ACID'>PGH</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7tim FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7tim OCA], [https://pdbe.org/7tim PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7tim RCSB], [https://www.ebi.ac.uk/pdbsum/7tim PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7tim ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/TPIS_YEAST TPIS_YEAST]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ti/7tim_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=7tim ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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7TIM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] with PGH as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=7TIM OCA].
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*[[Triose phosphate isomerase 3D structures|Triose phosphate isomerase 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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Structure of the triosephosphate isomerase-phosphoglycolohydroxamate complex: an analogue of the intermediate on the reaction pathway., Davenport RC, Bash PA, Seaton BA, Karplus M, Petsko GA, Ringe D, Biochemistry. 1991 Jun 18;30(24):5821-6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=2043623 2043623]
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[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
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[[Category: Single protein]]
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[[Category: Bash PA]]
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[[Category: Triose-phosphate isomerase]]
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[[Category: Davenport RC]]
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[[Category: Bash, P.A.]]
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[[Category: Karplus M]]
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[[Category: Davenport, R.C.]]
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[[Category: Petsko GA]]
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[[Category: Karplus, M.]]
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[[Category: Ringe D]]
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[[Category: Petsko, G.A.]]
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[[Category: Seaton BA]]
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[[Category: Ringe, D.]]
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[[Category: Seaton, B.A.]]
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[[Category: PGH]]
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[[Category: intramolecular oxidoreductase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 15:11:39 2007''
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Current revision

STRUCTURE OF THE TRIOSEPHOSPHATE ISOMERASE-PHOSPHOGLYCOLOHYDROXAMATE COMPLEX: AN ANALOGUE OF THE INTERMEDIATE ON THE REACTION PATHWAY

PDB ID 7tim

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