1g0k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:21, 7 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1g0k.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF T4 LYSOZYME MUTANT T152C==
-
The line below this paragraph, containing "STRUCTURE_1g0k", creates the "Structure Box" on the page.
+
<StructureSection load='1g0k' size='340' side='right'caption='[[1g0k]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1g0k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G0K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1G0K FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HED:2-HYDROXYETHYL+DISULFIDE'>HED</scene></td></tr>
-
{{STRUCTURE_1g0k| PDB=1g0k | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1g0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1g0k OCA], [https://pdbe.org/1g0k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1g0k RCSB], [https://www.ebi.ac.uk/pdbsum/1g0k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1g0k ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ENLYS_BPT4 ENLYS_BPT4] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g0/1g0k_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1g0k ConSurf].
 +
<div style="clear:both"></div>
-
===CRYSTAL STRUCTURE OF T4 LYSOZYME MUTANT T152C===
+
==See Also==
-
 
+
*[[Lysozyme 3D structures|Lysozyme 3D structures]]
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_11316887}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 11316887 is the PubMed ID number.
+
</StructureSection>
-
-->
+
[[Category: Escherichia virus T4]]
-
{{ABSTRACT_PUBMED_11316887}}
+
[[Category: Large Structures]]
-
 
+
[[Category: Baase WA]]
-
==About this Structure==
+
[[Category: Matthews BW]]
-
1G0K is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G0K OCA].
+
[[Category: Quillin ML]]
-
 
+
[[Category: Xu J]]
-
==Reference==
+
-
Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme., Xu J, Baase WA, Quillin ML, Baldwin EP, Matthews BW, Protein Sci. 2001 May;10(5):1067-78. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11316887 11316887]
+
-
[[Category: Enterobacteria phage t4]]
+
-
[[Category: Lysozyme]]
+
-
[[Category: Single protein]]
+
-
[[Category: Baase, W A.]]
+
-
[[Category: Matthews, B W.]]
+
-
[[Category: Quillin, M L.]]
+
-
[[Category: Xu, J.]]
+
-
[[Category: Bacteriolytic enzyme]]
+
-
[[Category: Glycosidase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: O-glycosyl]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 04:13:13 2008''
+

Current revision

CRYSTAL STRUCTURE OF T4 LYSOZYME MUTANT T152C

PDB ID 1g0k

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools