This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1gal

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:20, 27 March 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1gal.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF GLUCOSE OXIDASE FROM ASPERGILLUS NIGER: REFINED AT 2.3 ANGSTROMS RESOLUTION==
-
The line below this paragraph, containing "STRUCTURE_1gal", creates the "Structure Box" on the page.
+
<StructureSection load='1gal' size='340' side='right'caption='[[1gal]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1gal]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_niger Aspergillus niger]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GAL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GAL FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
{{STRUCTURE_1gal| PDB=1gal | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gal FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gal OCA], [https://pdbe.org/1gal PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gal RCSB], [https://www.ebi.ac.uk/pdbsum/1gal PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gal ProSAT]</span></td></tr>
-
 
+
</table>
-
===CRYSTAL STRUCTURE OF GLUCOSE OXIDASE FROM ASPERGILLUS NIGER: REFINED AT 2.3 ANGSTROMS RESOLUTION===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/GOX_ASPNG GOX_ASPNG]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_8421298}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 8421298 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ga/1gal_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_8421298}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1GAL is a [[Single protein]] structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GAL OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gal ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Crystal structure of glucose oxidase from Aspergillus niger refined at 2.3 A resolution., Hecht HJ, Kalisz HM, Hendle J, Schmid RD, Schomburg D, J Mol Biol. 1993 Jan 5;229(1):153-72. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8421298 8421298]
+
</StructureSection>
-
[[Category: Glucose oxidase]]
+
[[Category: Aspergillus niger]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Hecht, H J.]]
+
[[Category: Hecht HJ]]
-
[[Category: Hendle, J.]]
+
[[Category: Hendle J]]
-
[[Category: Kalisz, K.]]
+
[[Category: Kalisz K]]
-
[[Category: Schmid, R D.]]
+
[[Category: Schmid RD]]
-
[[Category: Schomburg, D.]]
+
[[Category: Schomburg D]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 05:00:03 2008''
+

Current revision

CRYSTAL STRUCTURE OF GLUCOSE OXIDASE FROM ASPERGILLUS NIGER: REFINED AT 2.3 ANGSTROMS RESOLUTION

PDB ID 1gal

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1gal"
Personal tools