Template:STRUCTURE 1gm5

From Proteopedia

(Difference between revisions)

Current revision

Ligands:

Structural annotation:
Resources:	InterPro : Ipr001650, Ipr004365, Ipr011545, Ipr004609, Ipr014021, Ipr014001 Pfam : PF00271, PF01336, PF00270 SCOP : d1gm5a1, d1gm5a4, d1gm5a2, d1gm5a3 UniProt : Q9WY48

Functional annotation:
Biological process:	DNA repair DNA recombination
Molecular function:	nucleotide binding ATP-dependent helicase activity helicase activity nucleic acid binding ATP-dependent DNA helicase activity ATP binding hydrolase activity

Evolutionary conservation:

Toggle Conservation Colors:

Rows = identical sequences:

Further Information:

Caveats,

Explanation,
Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, RCSB, PDBsum

Coordinates:

save as pdb, mmCIF, xml

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1gm5"

@@ Line 1: / Line 1: @@
-{{StructureD
+{{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1gm5, resolution 3.24&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1gm5]], [[Resolution|resolution]] 3.24&Aring; (<scene name='initialview01'>default scene</scene>)}}}
 |LIGAND= <scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04488 RecG_wedge_OBF], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00079 HELICc], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1200 RecG], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00269 DEXHc]</span>
+|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gm5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gm5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gm5 RCSB], [http://www.ebi.ac.uk/pdbsum/1gm5 PDBsum]</span>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gm5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gm5 OCA], [http://www.ebi.ac.uk/pdbsum/1gm5 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1gm5 RCSB]</span>
 |FUNCTION={{GO|id=GO:0000166 | text = nucleotide binding}}{{GO|id=GO:0008026 | text = ATP-dependent helicase activity}}{{GO|id=GO:0004386 | text = helicase activity}}{{GO|id=GO:0003676 | text = nucleic acid binding}}{{GO|id=GO:0004003 | text = ATP-dependent DNA helicase activity}}{{GO|id=GO:0005524 | text = ATP binding}}{{GO|id=GO:0016787 | text = hydrolase activity}}
 |PROCESS={{GO|id=GO:0006281 | text = DNA repair}}{{GO|id=GO:0006310 | text = DNA recombination}}
 |SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001650 Ipr001650], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004365 Ipr004365], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011545 Ipr011545], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004609 Ipr004609], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014021 Ipr014021], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014001 Ipr014001]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00271 PF00271], [http://pfam.sanger.ac.uk/family?acc=PF01336 PF01336], [http://pfam.sanger.ac.uk/family?acc=PF00270 PF00270]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=65298 d1gm5a1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=65301 d1gm5a4], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=65299 d1gm5a2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=65300 d1gm5a3]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?Q9WY48 Q9WY48]</span>
+|uPDB=1GM5|CONSURF={{!}}-
+{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+{{!}} '''Toggle Conservation Colors:'''
+{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+Rows = identical sequences:
+<jmol>
+<jmolButton>
+<script></script>
+<text>A [x]</text>
+<name>jmb_1gm5_A</name>
+<title>toggle chain A</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>B [x]</text>
+<name>jmb_1gm5_B</name>
+<title>toggle chain B</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>C [x]</text>
+<name>jmb_1gm5_C</name>
+<title>toggle chain C</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>D [x]</text>
+<name>jmb_1gm5_D</name>
+<title>toggle chain D</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
 }}

Template:STRUCTURE 1gm5

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