1h2s

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:01, 21 November 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1h2s.png|left|200px]]
 
-
<!--
+
==Molecular basis of transmenbrane signalling by sensory rhodopsin II-transducer complex==
-
The line below this paragraph, containing "STRUCTURE_1h2s", creates the "Structure Box" on the page.
+
<StructureSection load='1h2s' size='340' side='right'caption='[[1h2s]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1h2s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1H2S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1H2S FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.93&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
-
{{STRUCTURE_1h2s| PDB=1h2s | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1h2s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1h2s OCA], [https://pdbe.org/1h2s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1h2s RCSB], [https://www.ebi.ac.uk/pdbsum/1h2s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1h2s ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/BACS2_NATPH BACS2_NATPH] Involved in the control of phototaxis. Seems to activate a methyl-accepting protein (HTR-II). Photoreceptor for blue light.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h2/1h2s_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1h2s ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Microbial rhodopsins, which constitute a family of seven-helix membrane proteins with retinal as a prosthetic group, are distributed throughout the Bacteria, Archaea and Eukaryota. This family of photoactive proteins uses a common structural design for two distinct functions: light-driven ion transport and phototaxis. The sensors activate a signal transduction chain similar to that of the two-component system of eubacterial chemotaxis. The link between the photoreceptor and the following cytoplasmic signal cascade is formed by a transducer molecule that binds tightly and specifically to its cognate receptor by means of two transmembrane helices (TM1 and TM2). It is thought that light excitation of sensory rhodopsin II from Natronobacterium pharaonis (SRII) in complex with its transducer (HtrII) induces an outward movement of its helix F (ref. 6), which in turn triggers a rotation of TM2 (ref. 7). It is unclear how this TM2 transition is converted into a cellular signal. Here we present the X-ray structure of the complex between N. pharaonis SRII and the receptor-binding domain of HtrII at 1.94 A resolution, which provides an atomic picture of the first signal transduction step. Our results provide evidence for a common mechanism for this process in phototaxis and chemotaxis.
-
===MOLECULAR BASIS OF TRANSMENBRANE SIGNALLING BY SENSORY RHODOPSIN II-TRANSDUCER COMPLEX===
+
Molecular basis of transmembrane signalling by sensory rhodopsin II-transducer complex.,Gordeliy VI, Labahn J, Moukhametzianov R, Efremov R, Granzin J, Schlesinger R, Buldt G, Savopol T, Scheidig AJ, Klare JP, Engelhard M Nature. 2002 Oct 3;419(6906):484-7. PMID:12368857<ref>PMID:12368857</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 1h2s" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_12368857}}, adds the Publication Abstract to the page
+
*[[Bacteriorhodopsin 3D structures|Bacteriorhodopsin 3D structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 12368857 is the PubMed ID number.
+
*[[Rhodopsin 3D structures|Rhodopsin 3D structures]]
-
-->
+
== References ==
-
{{ABSTRACT_PUBMED_12368857}}
+
<references/>
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1H2S is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1H2S OCA].
+
[[Category: Large Structures]]
-
 
+
-
==Reference==
+
-
Molecular basis of transmembrane signalling by sensory rhodopsin II-transducer complex., Gordeliy VI, Labahn J, Moukhametzianov R, Efremov R, Granzin J, Schlesinger R, Buldt G, Savopol T, Scheidig AJ, Klare JP, Engelhard M, Nature. 2002 Oct 3;419(6906):484-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12368857 12368857]
+
[[Category: Natronomonas pharaonis]]
[[Category: Natronomonas pharaonis]]
-
[[Category: Protein complex]]
+
[[Category: Bueldt G]]
-
[[Category: Bueldt, G.]]
+
[[Category: Efremov R]]
-
[[Category: Efremov, R.]]
+
[[Category: Engelhard M]]
-
[[Category: Engelhard, M.]]
+
[[Category: Gordeliy VI]]
-
[[Category: Gordeliy, V I.]]
+
[[Category: Granzin J]]
-
[[Category: Granzin, J.]]
+
[[Category: Klare JP]]
-
[[Category: Klare, J P.]]
+
[[Category: Labahn J]]
-
[[Category: Labahn, J.]]
+
[[Category: Moukhametzianov R]]
-
[[Category: Moukhametzianov, R.]]
+
[[Category: Savopol T]]
-
[[Category: Savopol, T.]]
+
[[Category: Scheidig A]]
-
[[Category: Scheidig, A.]]
+
[[Category: Schlesinger R]]
-
[[Category: Schlesinger, R.]]
+
-
[[Category: Menbrane protein complex]]
+
-
[[Category: Signal transduction]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 06:31:47 2008''
+

Current revision

Molecular basis of transmenbrane signalling by sensory rhodopsin II-transducer complex

PDB ID 1h2s

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools