1hhv

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{{Seed}}
 
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[[Image:1hhv.png|left|200px]]
 
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==SOLUTION STRUCTURE OF VIRUS CHEMOKINE VMIP-II==
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The line below this paragraph, containing "STRUCTURE_1hhv", creates the "Structure Box" on the page.
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<StructureSection load='1hhv' size='340' side='right'caption='[[1hhv]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1hhv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_herpesvirus_8_strain_GK18 Human herpesvirus 8 strain GK18]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HHV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HHV FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 25 models</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_1hhv| PDB=1hhv | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hhv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hhv OCA], [https://pdbe.org/1hhv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hhv RCSB], [https://www.ebi.ac.uk/pdbsum/1hhv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hhv ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/VMI2_HHV8P VMI2_HHV8P] Blocks infection by several different human immunodeficiency virus type 1 (HIV-1) strains. This occurs because vMIP-II binds to a wide range of chemokine receptors. May form part of the response to host defenses contributing to virus-induced neoplasia and may have relevance to KSHV and HIV-I interactions.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hh/1hhv_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hhv ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Human herpesvirus-8 (HHV-8) is the infectious agent responsible for Kaposi's sarcoma and encodes a protein, macrophage inflammatory protein-II (vMIP-II), which shows sequence similarity to the human CC chemokines. vMIP-II has broad receptor specificity that crosses chemokine receptor subfamilies, and inhibits HIV-1 viral entry mediated by numerous chemokine receptors. In this study, the solution structure of chemically synthesized vMIP-II was determined by nuclear magnetic resonance. The protein is a monomer and possesses the chemokine fold consisting of a flexible N-terminus, three antiparallel beta strands, and a C-terminal alpha helix. Except for the N-terminal residues (residues 1-13) and the last two C-terminal residues (residues 73-74), the structure of vMIP-II is well-defined, exhibiting average rmsd of 0.35 and 0.90 A for the backbone heavy atoms and all heavy atoms of residues 14-72, respectively. Taking into account the sequence differences between the various CC chemokines and comparing their three-dimensional structures allows us to implicate residues that influence the quaternary structure and receptor binding and activation of these proteins in solution. The analysis of the sequence and three-dimensional structure of vMIP-II indicates the presence of epitopes involved in binding two receptors CCR2 and CCR5. We propose that vMIP-II was initially specific for CCR5 and acquired receptor-binding properties to CCR2 and other chemokine receptors.
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===SOLUTION STRUCTURE OF VIRUS CHEMOKINE VMIP-II===
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CCR2 and CCR5 receptor-binding properties of herpesvirus-8 vMIP-II based on sequence analysis and its solution structure.,Shao W, Fernandez E, Sachpatzidis A, Wilken J, Thompson DA, Schweitzer BI, Lolis E Eur J Biochem. 2001 May;268(10):2948-59. PMID:11358512<ref>PMID:11358512</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_11358512}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1hhv" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 11358512 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_11358512}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Human herpesvirus 8 strain GK18]]
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1HHV is a [[Single protein]] structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HHV OCA].
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[[Category: Large Structures]]
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[[Category: Fernandez E]]
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==Reference==
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[[Category: Lolis E]]
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CCR2 and CCR5 receptor-binding properties of herpesvirus-8 vMIP-II based on sequence analysis and its solution structure., Shao W, Fernandez E, Sachpatzidis A, Wilken J, Thompson DA, Schweitzer BI, Lolis E, Eur J Biochem. 2001 May;268(10):2948-59. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11358512 11358512]
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[[Category: Navenot JM]]
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[[Category: Single protein]]
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[[Category: Pepiper S]]
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[[Category: Fernandez, E.]]
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[[Category: Schweitzer BI]]
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[[Category: Lolis, E.]]
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[[Category: Shao W]]
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[[Category: Navenot, J M.]]
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[[Category: Thompson DA]]
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[[Category: Pepiper, S.]]
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[[Category: Wilken J]]
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[[Category: Schweitzer, B I.]]
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[[Category: Shao, W.]]
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[[Category: Thompson, D A.]]
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[[Category: Wilken, J.]]
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[[Category: Nmr structure]]
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[[Category: Receptor binding]]
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[[Category: Virus chemokine]]
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[[Category: Vmip-ii]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 08:12:16 2008''
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Current revision

SOLUTION STRUCTURE OF VIRUS CHEMOKINE VMIP-II

PDB ID 1hhv

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