1hyp

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{{Seed}}
 
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[[Image:1hyp.png|left|200px]]
 
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==CRYSTAL STRUCTURE OF HYDROPHOBIC PROTEIN FROM SOYBEAN; A MEMBER OF A NEW CYSTINE-RICH FAMILY==
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The line below this paragraph, containing "STRUCTURE_1hyp", creates the "Structure Box" on the page.
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<StructureSection load='1hyp' size='340' side='right'caption='[[1hyp]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1hyp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HYP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HYP FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hyp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hyp OCA], [https://pdbe.org/1hyp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hyp RCSB], [https://www.ebi.ac.uk/pdbsum/1hyp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hyp ProSAT]</span></td></tr>
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{{STRUCTURE_1hyp| PDB=1hyp | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/HPSE_SOYBN HPSE_SOYBN]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hy/1hyp_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hyp ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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X-ray diffraction methods have been used to determine the structure of the 8.3 kDa hydrophobic protein from soybean and to refine the atomic co-ordinates to a crystallographic R-factor of 18.7% at 1.8 A resolution. The molecule is a four-helix bundle, which together with the connecting loops and a twisted beta-strand form a spiral. The surface contains 70% apolar atoms, and the crystal packing is dominated by hydrophobic interactions, producing a two-dimensional sheet of protein molecules. Most of the 59 water molecules located are involved in hydrophilic contacts and their structural organization does not seem to be affected by the high hydrophobicity of the molecule. From the protein fold it appears that three of the four disulphide bridges are important for keeping the amino and carboxyl-terminal segments in place in the native form, while the central part of the molecule is stabilized by many hydrophobic interactions. Although the protein function is not known, a number of possibilities can be excluded on experimental grounds and by comparison with other members of the family.
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===CRYSTAL STRUCTURE OF HYDROPHOBIC PROTEIN FROM SOYBEAN; A MEMBER OF A NEW CYSTINE-RICH FAMILY===
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Crystal structure of hydrophobic protein from soybean; a member of a new cysteine-rich family.,Baud F, Pebay-Peyroula E, Cohen-Addad C, Odani S, Lehmann MS J Mol Biol. 1993 Jun 5;231(3):877-87. PMID:8515457<ref>PMID:8515457</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_8515457}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1hyp" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 8515457 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_8515457}}
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__TOC__
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</StructureSection>
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==About this Structure==
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1HYP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HYP OCA].
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==Reference==
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Crystal structure of hydrophobic protein from soybean; a member of a new cysteine-rich family., Baud F, Pebay-Peyroula E, Cohen-Addad C, Odani S, Lehmann MS, J Mol Biol. 1993 Jun 5;231(3):877-87. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8515457 8515457]
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[[Category: Glycine max]]
[[Category: Glycine max]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Al., M S.Lehmann et.]]
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[[Category: Lehmann MS]]
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[[Category: Hydrophobic seed protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 10:08:34 2008''
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Current revision

CRYSTAL STRUCTURE OF HYDROPHOBIC PROTEIN FROM SOYBEAN; A MEMBER OF A NEW CYSTINE-RICH FAMILY

PDB ID 1hyp

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