This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1jju

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:52, 3 April 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1jju.png|left|200px]]
 
-
<!--
+
==Structure of a Quinohemoprotein Amine Dehydrogenase with a Unique Redox Cofactor and Highly Unusual Crosslinking==
-
The line below this paragraph, containing "STRUCTURE_1jju", creates the "Structure Box" on the page.
+
<StructureSection load='1jju' size='340' side='right'caption='[[1jju]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1jju]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JJU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JJU FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TBU:TERTIARY-BUTYL+ALCOHOL'>TBU</scene>, <scene name='pdbligand=TRQ:2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC+ACID'>TRQ</scene></td></tr>
-
{{STRUCTURE_1jju| PDB=1jju | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jju FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jju OCA], [https://pdbe.org/1jju PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jju RCSB], [https://www.ebi.ac.uk/pdbsum/1jju PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jju ProSAT]</span></td></tr>
-
 
+
</table>
-
===Structure of a Quinohemoprotein Amine Dehydrogenase with a Unique Redox Cofactor and Highly Unusual Crosslinking===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q8VUT0_PARDE Q8VUT0_PARDE]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_11717396}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 11717396 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jj/1jju_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_11717396}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1JJU is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JJU OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jju ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Structure of a quinohemoprotein amine dehydrogenase with an uncommon redox cofactor and highly unusual crosslinking., Datta S, Mori Y, Takagi K, Kawaguchi K, Chen ZW, Okajima T, Kuroda S, Ikeda T, Kano K, Tanizawa K, Mathews FS, Proc Natl Acad Sci U S A. 2001 Dec 4;98(25):14268-73. Epub 2001 Nov 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11717396 11717396]
+
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Paracoccus denitrificans]]
[[Category: Paracoccus denitrificans]]
-
[[Category: Protein complex]]
+
[[Category: Chen Z-W]]
-
[[Category: Chen, Z W.]]
+
[[Category: Datta S]]
-
[[Category: Datta, S.]]
+
[[Category: Ikeda T]]
-
[[Category: Ikeda, T.]]
+
[[Category: Kano K]]
-
[[Category: Kano, K.]]
+
[[Category: Kawaguchi K]]
-
[[Category: Kawaguchi, K.]]
+
[[Category: Kuroda S]]
-
[[Category: Kuroda, S.]]
+
[[Category: Mathews FS]]
-
[[Category: Mathews, F S.]]
+
[[Category: Mori Y]]
-
[[Category: Mori, Y.]]
+
[[Category: Okajima T]]
-
[[Category: Okajima, T.]]
+
[[Category: Takagi K]]
-
[[Category: Takagi, K.]]
+
[[Category: Tanizawa K]]
-
[[Category: Tanizawa, K.]]
+
-
[[Category: Amine dehydrogenase]]
+
-
[[Category: Quinohemoprotein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 20:21:25 2008''
+

Current revision

Structure of a Quinohemoprotein Amine Dehydrogenase with a Unique Redox Cofactor and Highly Unusual Crosslinking

PDB ID 1jju

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1jju"
Personal tools