1jku

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:40, 7 February 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1jku.png|left|200px]]
 
-
<!--
+
==Crystal Structure of Manganese Catalase from Lactobacillus plantarum==
-
The line below this paragraph, containing "STRUCTURE_1jku", creates the "Structure Box" on the page.
+
<StructureSection load='1jku' size='340' side='right'caption='[[1jku]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1jku]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactiplantibacillus_plantarum Lactiplantibacillus plantarum]. The September 2004 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Catalase'' by David S. Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2004_9 10.2210/rcsb_pdb/mom_2004_9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JKU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JKU FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.84&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN3:MANGANESE+(III)+ION'>MN3</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene></td></tr>
-
{{STRUCTURE_1jku| PDB=1jku | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jku OCA], [https://pdbe.org/1jku PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jku RCSB], [https://www.ebi.ac.uk/pdbsum/1jku PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jku ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/MCAT_LACPN MCAT_LACPN]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jk/1jku_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jku ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of Manganese Catalase from Lactobacillus plantarum===
+
==See Also==
-
 
+
*[[Catalase|Catalase]]
-
 
+
*[[Catalase 3D structures|Catalase 3D structures]]
-
<!--
+
__TOC__
-
The line below this paragraph, {{ABSTRACT_PUBMED_11587647}}, adds the Publication Abstract to the page
+
</StructureSection>
-
(as it appears on PubMed at http://www.pubmed.gov), where 11587647 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_11587647}}
+
-
 
+
-
==About this Structure==
+
-
1JKU is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lactobacillus_plantarum Lactobacillus plantarum]. The following page contains interesting information on the relation of 1JKU with [[http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb57_1.html Catalase]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JKU OCA].
+
-
 
+
-
==Reference==
+
-
Crystal structure of manganese catalase from Lactobacillus plantarum., Barynin VV, Whittaker MM, Antonyuk SV, Lamzin VS, Harrison PM, Artymiuk PJ, Whittaker JW, Structure. 2001 Aug;9(8):725-38. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11587647 11587647]
+
[[Category: Catalase]]
[[Category: Catalase]]
-
[[Category: Lactobacillus plantarum]]
+
[[Category: Lactiplantibacillus plantarum]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Antonyuk, S V.]]
+
[[Category: RCSB PDB Molecule of the Month]]
-
[[Category: Artymiuk, P J.]]
+
[[Category: Antonyuk SV]]
-
[[Category: Barynin, V V.]]
+
[[Category: Artymiuk PJ]]
-
[[Category: Harrison, P M.]]
+
[[Category: Barynin VV]]
-
[[Category: Lamzin, V S.]]
+
[[Category: Harrison PM]]
-
[[Category: Whittaker, J W.]]
+
[[Category: Lamzin VS]]
-
[[Category: Whittaker, M M.]]
+
[[Category: Whittaker JW]]
-
[[Category: Catalase dimanganese]]
+
[[Category: Whittaker MM]]
-
[[Category: Hexamer]]
+
-
[[Category: Metalloenzyme]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 20:23:51 2008''
+

Current revision

Crystal Structure of Manganese Catalase from Lactobacillus plantarum

PDB ID 1jku

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools