1jox

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{{Seed}}
 
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[[Image:1jox.png|left|200px]]
 
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==NMR Structure of the LP5.1 Hairpin from Bacillus RNase P RNA Refined with Residual Dipolar Couplings==
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The line below this paragraph, containing "STRUCTURE_1jox", creates the "Structure Box" on the page.
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<StructureSection load='1jox' size='340' side='right'caption='[[1jox]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1jox]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JOX FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jox OCA], [https://pdbe.org/1jox PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jox RCSB], [https://www.ebi.ac.uk/pdbsum/1jox PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jox ProSAT]</span></td></tr>
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{{STRUCTURE_1jox| PDB=1jox | SCENE= }}
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Long-range interactions involving the P5.1 hairpin of Bacillus RNase P RNA are thought to form a structural truss to support RNA folding and activity. We determined the structure of this element by NMR and refined the structure using residual dipolar couplings from a sample weakly oriented in a dilute liquid crystalline mixture of polyethylene glycol and hexanol. Dipolar coupling refinement improved the global precision of the structure from 1.5 to 1.2 A (to the mean), revised the bend angle between segments of the P5.1 stem and corroborated the structure of the loop region. The UGAGAU hexaloop of P5.1 contains two stacks of bases on opposite sides of the loop, distinguishing it from GNRA tetraloops. The unusual conformation of the juxtaposed uracil residues within the hexaloop may explain their requirement in transactivation assays.
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===NMR Structure of the LP5.1 Hairpin from Bacillus RNase P RNA Refined with Residual Dipolar Couplings===
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Structure of the UGAGAU hexaloop that braces Bacillus RNase P for action.,Leeper TC, Martin MB, Kim H, Cox S, Semenchenko V, Schmidt FJ, Van Doren SR Nat Struct Biol. 2002 May;9(5):397-403. PMID:11927952<ref>PMID:11927952</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_11927952}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1jox" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 11927952 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_11927952}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOX OCA].
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[[Category: Leeper TC]]
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[[Category: Schmidt FJ]]
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==Reference==
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[[Category: Van Doren SR]]
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Structure of the UGAGAU hexaloop that braces Bacillus RNase P for action., Leeper TC, Martin MB, Kim H, Cox S, Semenchenko V, Schmidt FJ, Van Doren SR, Nat Struct Biol. 2002 May;9(5):397-403. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11927952 11927952]
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[[Category: Doren, S R.Van.]]
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[[Category: Leeper, T C.]]
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[[Category: Schmidt, F J.]]
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[[Category: Hairpin]]
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[[Category: Residual dipolar coupling refinement]]
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[[Category: Ribonucleic acid]]
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[[Category: Rnase p]]
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[[Category: Ugnrau]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 20:34:35 2008''
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Current revision

NMR Structure of the LP5.1 Hairpin from Bacillus RNase P RNA Refined with Residual Dipolar Couplings

PDB ID 1jox

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