1k2j

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{{Seed}}
 
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[[Image:1k2j.png|left|200px]]
 
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==NMR MINIMIZED AVERAGE STRUCTURE OF d(CGTACG)2==
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The line below this paragraph, containing "STRUCTURE_1k2j", creates the "Structure Box" on the page.
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<StructureSection load='1k2j' size='340' side='right'caption='[[1k2j]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1k2j]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K2J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K2J FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k2j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k2j OCA], [https://pdbe.org/1k2j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k2j RCSB], [https://www.ebi.ac.uk/pdbsum/1k2j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k2j ProSAT]</span></td></tr>
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{{STRUCTURE_1k2j| PDB=1k2j | SCENE= }}
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Solution structures and base pair stacking of a self- complementary DNA hexamer d(CGTACG)(2) have been studied at 5, 10 and 15 degrees C, respectively. The stacking interactions among the center base pair steps of the DNA duplex are found to improve when the terminal base pairs became less stable due to end fraying. A new structural quantity, the stacking sum (Sigma(s)), is introduced to indicate small changes in the stacking overlaps between base pairs. The improvements in the stacking overlaps to maintain the double helical conformation are probably the cause for the observed temperature dependent structural changes in double helical DNA molecule. A detailed analysis of the helical parameters, backbone torsion angles, base orientations and sugar conformations of these structures has been performed.
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===NMR MINIMIZED AVERAGE STRUCTURE OF d(CGTACG)2===
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Low temperature solution structures and base pair stacking of double helical d(CGTACG)(2).,Lam SL, Ip LN J Biomol Struct Dyn. 2002 Apr;19(5):907-17. PMID:11922844<ref>PMID:11922844</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_11922844}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1k2j" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 11922844 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_11922844}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K2J OCA].
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[[Category: Ip LN]]
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[[Category: Lam SL]]
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==Reference==
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Low temperature solution structures and base pair stacking of double helical d(CGTACG)(2)., Lam SL, Ip LN, J Biomol Struct Dyn. 2002 Apr;19(5):907-17. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11922844 11922844]
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[[Category: Ip, L N.]]
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[[Category: Lam, S L.]]
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[[Category: Self-complementary dna]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 21:32:45 2008''
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Current revision

NMR MINIMIZED AVERAGE STRUCTURE OF d(CGTACG)2

PDB ID 1k2j

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