1hn1

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(New page: 200px<br /><applet load="1hn1" size="450" color="white" frame="true" align="right" spinBox="true" caption="1hn1, resolution 3.0&Aring;" /> '''E. COLI (LAC Z) BETA-...)
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[[Image:1hn1.jpg|left|200px]]<br /><applet load="1hn1" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1hn1, resolution 3.0&Aring;" />
 
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'''E. COLI (LAC Z) BETA-GALACTOSIDASE (ORTHORHOMBIC)'''<br />
 
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==Overview==
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==E. COLI (LAC Z) BETA-GALACTOSIDASE (ORTHORHOMBIC)==
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Flash-freezing, which has become routine in macromolecular X-ray, crystallography, causes the crystal to contract substantially. In the case, of Escherichia coli beta-galactosidase the changes are reversible and are, shown to be due to lattice repacking. On cooling, the area of the protein, surface involved in lattice contacts increases by 50 %. There are, substantial alterations in intermolecular contacts, these changes being, dominated by the long, polar side-chains. For entropic reasons such, side-chains, as well as surface solvent molecules, tend to be somewhat, disordered at room temperature but can form extensive hydrogen-bonded, networks on cooling. Low-temperature density measurements suggest that, at, least in some cases, the beneficial effect of cryosolvents may be due to a, density increase on vitrification which reduces the volume of bulk solvent, that needs to be expelled from the crystal. Analysis of beta-galactosidase, and several other proteins suggests that both intramolecular and, intermolecular contact interfaces can be perturbed by cryocooling but that, the changes tend to be more dramatic in the latter case. The, temperature-dependence of the intermolecular interactions suggests that, caution may be necessary in interpreting protein-protein and, protein-nucleic acid interactions based on low-temperature crystal, structures.
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<StructureSection load='1hn1' size='340' side='right'caption='[[1hn1]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1hn1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HN1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HN1 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hn1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hn1 OCA], [https://pdbe.org/1hn1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hn1 RCSB], [https://www.ebi.ac.uk/pdbsum/1hn1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hn1 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/BGAL_ECOLI BGAL_ECOLI]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hn/1hn1_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hn1 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Flash-freezing, which has become routine in macromolecular X-ray crystallography, causes the crystal to contract substantially. In the case of Escherichia coli beta-galactosidase the changes are reversible and are shown to be due to lattice repacking. On cooling, the area of the protein surface involved in lattice contacts increases by 50 %. There are substantial alterations in intermolecular contacts, these changes being dominated by the long, polar side-chains. For entropic reasons such side-chains, as well as surface solvent molecules, tend to be somewhat disordered at room temperature but can form extensive hydrogen-bonded networks on cooling. Low-temperature density measurements suggest that, at least in some cases, the beneficial effect of cryosolvents may be due to a density increase on vitrification which reduces the volume of bulk solvent that needs to be expelled from the crystal. Analysis of beta-galactosidase and several other proteins suggests that both intramolecular and intermolecular contact interfaces can be perturbed by cryocooling but that the changes tend to be more dramatic in the latter case. The temperature-dependence of the intermolecular interactions suggests that caution may be necessary in interpreting protein-protein and protein-nucleic acid interactions based on low-temperature crystal structures.
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==About this Structure==
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Reversible lattice repacking illustrates the temperature dependence of macromolecular interactions.,Juers DH, Matthews BW J Mol Biol. 2001 Aug 24;311(4):851-62. PMID:11518535<ref>PMID:11518535</ref>
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1HN1 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with MG and NA as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/4-hydroxybenzoyl-CoA_thioesterase 4-hydroxybenzoyl-CoA thioesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.2.23 3.1.2.23] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1HN1 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Reversible lattice repacking illustrates the temperature dependence of macromolecular interactions., Juers DH, Matthews BW, J Mol Biol. 2001 Aug 24;311(4):851-62. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11518535 11518535]
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</div>
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[[Category: 4-hydroxybenzoyl-CoA thioesterase]]
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<div class="pdbe-citations 1hn1" style="background-color:#fffaf0;"></div>
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[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Juers, D.H.]]
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[[Category: Matthews, B.W.]]
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[[Category: MG]]
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[[Category: NA]]
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[[Category: alpha/beta barrel]]
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[[Category: beta supersandwich]]
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[[Category: fibronectin]]
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[[Category: jelly roll barrel]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 16:39:54 2007''
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==See Also==
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*[[Galactosidase 3D structures|Galactosidase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Escherichia coli]]
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[[Category: Large Structures]]
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[[Category: Juers DH]]
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[[Category: Matthews BW]]

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E. COLI (LAC Z) BETA-GALACTOSIDASE (ORTHORHOMBIC)

PDB ID 1hn1

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