1kdn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:46, 7 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1kdn.png|left|200px]]
 
-
<!--
+
==STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE==
-
The line below this paragraph, containing "STRUCTURE_1kdn", creates the "Structure Box" on the page.
+
<StructureSection load='1kdn' size='340' side='right'caption='[[1kdn]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1kdn]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KDN FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=AF3:ALUMINUM+FLUORIDE'>AF3</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
{{STRUCTURE_1kdn| PDB=1kdn | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kdn OCA], [https://pdbe.org/1kdn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kdn RCSB], [https://www.ebi.ac.uk/pdbsum/1kdn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kdn ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NDKC_DICDI NDKC_DICDI]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kd/1kdn_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kdn ConSurf].
 +
<div style="clear:both"></div>
-
===STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE===
+
==See Also==
-
 
+
*[[Nucleoside diphosphate kinase 3D structures|Nucleoside diphosphate kinase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_9108019}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 9108019 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_9108019}}
+
-
 
+
-
==About this Structure==
+
-
1KDN is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KDN OCA].
+
-
 
+
-
==Reference==
+
-
AlF3 mimics the transition state of protein phosphorylation in the crystal structure of nucleoside diphosphate kinase and MgADP., Xu YW, Morera S, Janin J, Cherfils J, Proc Natl Acad Sci U S A. 1997 Apr 15;94(8):3579-83. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9108019 9108019]
+
[[Category: Dictyostelium discoideum]]
[[Category: Dictyostelium discoideum]]
-
[[Category: Nucleoside-diphosphate kinase]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Cherfils J]]
-
[[Category: Cherfils, J.]]
+
[[Category: Janin J]]
-
[[Category: Janin, J.]]
+
[[Category: Morera S]]
-
[[Category: Morera, S.]]
+
[[Category: Xu YW]]
-
[[Category: Xu, Y W.]]
+
-
[[Category: Atp-binding]]
+
-
[[Category: Kinase]]
+
-
[[Category: Phosphotransferase]]
+
-
[[Category: Transferase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 10:10:53 2008''
+

Current revision

STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE

PDB ID 1kdn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1kdn"
Personal tools