1kgp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:25, 13 March 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1kgp.png|left|200px]]
 
-
<!--
+
==R2F from Corynebacterium Ammoniagenes in its Mn substituted form==
-
The line below this paragraph, containing "STRUCTURE_1kgp", creates the "Structure Box" on the page.
+
<StructureSection load='1kgp' size='340' side='right'caption='[[1kgp]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1kgp]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_ammoniagenes Corynebacterium ammoniagenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KGP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KGP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-
{{STRUCTURE_1kgp| PDB=1kgp | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kgp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kgp OCA], [https://pdbe.org/1kgp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kgp RCSB], [https://www.ebi.ac.uk/pdbsum/1kgp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kgp ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/O69274_CORAM O69274_CORAM] Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity).[PIRNR:PIRNR000355]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kg/1kgp_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kgp ConSurf].
 +
<div style="clear:both"></div>
-
===R2F from Corynebacterium Ammoniagenes in its Mn substituted form===
+
==See Also==
-
 
+
*[[Ribonucleotide reductase 3D structures|Ribonucleotide reductase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_11802741}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 11802741 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_11802741}}
+
-
 
+
-
==About this Structure==
+
-
1KGP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Corynebacterium_ammoniagenes Corynebacterium ammoniagenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KGP OCA].
+
-
 
+
-
==Reference==
+
-
Crystal structure of the di-iron/radical protein of ribonucleotide reductase from Corynebacterium ammoniagenes., Hogbom M, Huque Y, Sjoberg BM, Nordlund P, Biochemistry. 2002 Jan 29;41(4):1381-9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11802741 11802741]
+
[[Category: Corynebacterium ammoniagenes]]
[[Category: Corynebacterium ammoniagenes]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Hogbom, M.]]
+
[[Category: Hogbom M]]
-
[[Category: Huque, Y.]]
+
[[Category: Huque Y]]
-
[[Category: Nordlund, P.]]
+
[[Category: Nordlund P]]
-
[[Category: Sjoberg, B M.]]
+
[[Category: Sjoberg BM]]
-
[[Category: Arm exchange]]
+
-
[[Category: Helix bundle]]
+
-
[[Category: Radical protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 10:19:09 2008''
+

Current revision

R2F from Corynebacterium Ammoniagenes in its Mn substituted form

PDB ID 1kgp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1kgp"
Personal tools