This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1kk9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:00, 3 April 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1kk9.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF E. COLI YCIO==
-
The line below this paragraph, containing "STRUCTURE_1kk9", creates the "Structure Box" on the page.
+
<StructureSection load='1kk9' size='340' side='right'caption='[[1kk9]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1kk9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KK9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KK9 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1kk9| PDB=1kk9 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kk9 OCA], [https://pdbe.org/1kk9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kk9 RCSB], [https://www.ebi.ac.uk/pdbsum/1kk9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kk9 ProSAT], [https://www.topsan.org/Proteins/BSGI/1kk9 TOPSAN]</span></td></tr>
-
 
+
</table>
-
===CRYSTAL STRUCTURE OF E. COLI YCIO===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/YCIO_ECOLI YCIO_ECOLI]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1KK9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KK9 OCA].
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==Reference==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/1kk9_consurf.spt"</scriptWhenChecked>
-
Crystal structure of the YciO protein from Escherichia coli., Jia J, Lunin VV, Sauve V, Huang LW, Matte A, Cygler M, Proteins. 2002 Oct 1;49(1):139-41. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12211024 12211024]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kk9 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: BSGI, Montreal-Kingston Bacterial Structural Genomics Initiative.]]
+
[[Category: Cygler M]]
-
[[Category: Cygler, M.]]
+
[[Category: Huang L-W]]
-
[[Category: Huang, L W.]]
+
[[Category: Jia J]]
-
[[Category: Jia, J.]]
+
[[Category: Lunin VV]]
-
[[Category: Lunin, V V.]]
+
[[Category: Matte A]]
-
[[Category: Matte, A.]]
+
[[Category: Sauve V]]
-
[[Category: Sauve, V.]]
+
-
[[Category: Alpha/beta open twisted sheet]]
+
-
[[Category: Bsgi]]
+
-
[[Category: Montreal-kingston bacterial structural genomics initiative]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 10:27:53 2008''
+

Current revision

CRYSTAL STRUCTURE OF E. COLI YCIO

PDB ID 1kk9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools