1hxv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1hxv" size="450" color="white" frame="true" align="right" spinBox="true" caption="1hxv" /> '''PPIASE DOMAIN OF THE MYCOPLASMA GENITALIUM T...)
Current revision (08:33, 22 May 2024) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1hxv.gif|left|200px]]<br /><applet load="1hxv" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1hxv" />
 
-
'''PPIASE DOMAIN OF THE MYCOPLASMA GENITALIUM TRIGGER FACTOR'''<br />
 
-
==Overview==
+
==PPIASE DOMAIN OF THE MYCOPLASMA GENITALIUM TRIGGER FACTOR==
-
We have solved the solution structure of the peptidyl-prolyl cis-trans, isomerase (PPIase) domain of the trigger factor from Mycoplasma genitalium, by homo- and heteronuclear NMR spectroscopy. Our results lead to a, well-defined structure with a backbone rmsd of 0.23 A. As predicted, the, PPIase domain of the trigger factor adopts the FK506 binding protein, (FKBP) fold. Furthermore, our NMR relaxation data indicate that the, dynamic behavior of the trigger factor PPIase domain and of FKBP are, similar. Structural variations when compared to FKBP exist in the flap, region and within the bulges of strand 5 of the beta sheet. Although the, active-site crevice is similar to that of FKBP, subtle steric variations, in this region can explain why FK506 does not bind to the trigger factor., Sequence variability (27% identity) between trigger factor and FKBP, results in significant differences in surface charge distribution and the, absence of the first strand of the central beta sheet. Our data indicate, however, that this strand may be partially structured as "nascent" beta, strand. This makes the trigger factor PPIase domain the most minimal, representative of the FKBP like protein family of PPIases.
+
<StructureSection load='1hxv' size='340' side='right'caption='[[1hxv]]' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1hxv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycoplasma_genitalium Mycoplasma genitalium]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HXV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HXV FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hxv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hxv OCA], [https://pdbe.org/1hxv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hxv RCSB], [https://www.ebi.ac.uk/pdbsum/1hxv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hxv ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/TIG_MYCGE TIG_MYCGE] Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hx/1hxv_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hxv ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
We have solved the solution structure of the peptidyl-prolyl cis-trans isomerase (PPIase) domain of the trigger factor from Mycoplasma genitalium by homo- and heteronuclear NMR spectroscopy. Our results lead to a well-defined structure with a backbone rmsd of 0.23 A. As predicted, the PPIase domain of the trigger factor adopts the FK506 binding protein (FKBP) fold. Furthermore, our NMR relaxation data indicate that the dynamic behavior of the trigger factor PPIase domain and of FKBP are similar. Structural variations when compared to FKBP exist in the flap region and within the bulges of strand 5 of the beta sheet. Although the active-site crevice is similar to that of FKBP, subtle steric variations in this region can explain why FK506 does not bind to the trigger factor. Sequence variability (27% identity) between trigger factor and FKBP results in significant differences in surface charge distribution and the absence of the first strand of the central beta sheet. Our data indicate, however, that this strand may be partially structured as "nascent" beta strand. This makes the trigger factor PPIase domain the most minimal representative of the FKBP like protein family of PPIases.
-
==About this Structure==
+
NMR solution structure and dynamics of the peptidyl-prolyl cis-trans isomerase domain of the trigger factor from Mycoplasma genitalium compared to FK506-binding protein.,Vogtherr M, Jacobs DM, Parac TN, Maurer M, Pahl A, Saxena K, Ruterjans H, Griesinger C, Fiebig KM J Mol Biol. 2002 May 10;318(4):1097-115. PMID:12054805<ref>PMID:12054805</ref>
-
1HXV is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Mycoplasma_genitalium Mycoplasma genitalium]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1HXV OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
NMR solution structure and dynamics of the peptidyl-prolyl cis-trans isomerase domain of the trigger factor from Mycoplasma genitalium compared to FK506-binding protein., Vogtherr M, Jacobs DM, Parac TN, Maurer M, Pahl A, Saxena K, Ruterjans H, Griesinger C, Fiebig KM, J Mol Biol. 2002 May 10;318(4):1097-115. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12054805 12054805]
+
</div>
 +
<div class="pdbe-citations 1hxv" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Mycoplasma genitalium]]
[[Category: Mycoplasma genitalium]]
-
[[Category: Single protein]]
+
[[Category: Fiebig K]]
-
[[Category: Fiebig, K.]]
+
[[Category: Maurer M]]
-
[[Category: Maurer, M.]]
+
[[Category: Pahl A]]
-
[[Category: Pahl, A.]]
+
[[Category: Parac TN]]
-
[[Category: Parac, T.N.]]
+
[[Category: Vogtherr M]]
-
[[Category: Vogtherr, M.]]
+
-
[[Category: fkbp fold]]
+
-
[[Category: ppiase]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 16:53:52 2007''
+

Current revision

PPIASE DOMAIN OF THE MYCOPLASMA GENITALIUM TRIGGER FACTOR

PDB ID 1hxv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1hxv"
Personal tools