1kyx

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{{Seed}}
 
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[[Image:1kyx.png|left|200px]]
 
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==Lumazine Synthase from S.pombe bound to carboxyethyllumazine==
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The line below this paragraph, containing "STRUCTURE_1kyx", creates the "Structure Box" on the page.
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<StructureSection load='1kyx' size='340' side='right'caption='[[1kyx]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1kyx]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KYX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KYX FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CRM:3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC+ACID'>CRM</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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{{STRUCTURE_1kyx| PDB=1kyx | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kyx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kyx OCA], [https://pdbe.org/1kyx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kyx RCSB], [https://www.ebi.ac.uk/pdbsum/1kyx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kyx ProSAT]</span></td></tr>
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</table>
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===Lumazine Synthase from S.pombe bound to carboxyethyllumazine===
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== Function ==
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[https://www.uniprot.org/uniprot/RIB4_SCHPO RIB4_SCHPO] Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. Also binds riboflavin with an unexpected high affinity.<ref>PMID:11856310</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_12083520}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 12083520 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ky/1kyx_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_12083520}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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1KYX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KYX OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kyx ConSurf].
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<div style="clear:both"></div>
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==Reference==
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== References ==
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The structural basis of riboflavin binding to Schizosaccharomyces pombe 6,7-dimethyl-8-ribityllumazine synthase., Gerhardt S, Haase I, Steinbacher S, Kaiser JT, Cushman M, Bacher A, Huber R, Fischer M, J Mol Biol. 2002 May 17;318(5):1317-29. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12083520 12083520]
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<references/>
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[[Category: Riboflavin synthase]]
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Schizosaccharomyces pombe]]
[[Category: Schizosaccharomyces pombe]]
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[[Category: Single protein]]
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[[Category: Bacher A]]
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[[Category: Bacher, A.]]
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[[Category: Cushman M]]
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[[Category: Cushman, M.]]
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[[Category: Fischer M]]
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[[Category: Fischer, M.]]
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[[Category: Gerhardt S]]
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[[Category: Gerhardt, S.]]
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[[Category: Haase I]]
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[[Category: Haase, I.]]
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[[Category: Huber R]]
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[[Category: Huber, R.]]
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[[Category: Kaiser JT]]
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[[Category: Kaiser, J T.]]
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[[Category: Steinbacher S]]
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[[Category: Steinbacher, S.]]
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[[Category: Crystal structure]]
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[[Category: Ligand binding]]
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[[Category: Lumazine synthase]]
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[[Category: Riboflavin biosynthesis]]
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[[Category: Schizosaccharomyces pombe]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 11:19:20 2008''
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Current revision

Lumazine Synthase from S.pombe bound to carboxyethyllumazine

PDB ID 1kyx

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