1kzl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:26, 13 March 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1kzl.png|left|200px]]
 
-
<!--
+
==Riboflavin Synthase from S.pombe bound to Carboxyethyllumazine==
-
The line below this paragraph, containing "STRUCTURE_1kzl", creates the "Structure Box" on the page.
+
<StructureSection load='1kzl' size='340' side='right'caption='[[1kzl]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1kzl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KZL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KZL FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CRM:3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC+ACID'>CRM</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene></td></tr>
-
{{STRUCTURE_1kzl| PDB=1kzl | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kzl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kzl OCA], [https://pdbe.org/1kzl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kzl RCSB], [https://www.ebi.ac.uk/pdbsum/1kzl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kzl ProSAT]</span></td></tr>
-
 
+
</table>
-
===Riboflavin Synthase from S.pombe bound to Carboxyethyllumazine===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/RISA_SCHPO RISA_SCHPO] Catalyzes the dismutation of two molecules of 6,7-dimethyl-8-ribityllumazine, resulting in the formation of riboflavin and 5-amino-6-(D-ribitylamino)uracil.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_12377123}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 12377123 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kz/1kzl_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_12377123}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1KZL is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KZL OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kzl ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Studies on the reaction mechanism of riboflavin synthase: X-ray crystal structure of a complex with 6-carboxyethyl-7-oxo-8-ribityllumazine., Gerhardt S, Schott AK, Kairies N, Cushman M, Illarionov B, Eisenreich W, Bacher A, Huber R, Steinbacher S, Fischer M, Structure. 2002 Oct;10(10):1371-81. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12377123 12377123]
+
</StructureSection>
-
[[Category: Riboflavin synthase]]
+
[[Category: Large Structures]]
[[Category: Schizosaccharomyces pombe]]
[[Category: Schizosaccharomyces pombe]]
-
[[Category: Single protein]]
+
[[Category: Bacher A]]
-
[[Category: Bacher, A.]]
+
[[Category: Cushman M]]
-
[[Category: Cushman, M.]]
+
[[Category: Eisenreich W]]
-
[[Category: Eisenreich, W.]]
+
[[Category: Fischer M]]
-
[[Category: Fischer, M.]]
+
[[Category: Gerhardt S]]
-
[[Category: Gerhardt, S.]]
+
[[Category: Huber R]]
-
[[Category: Huber, R.]]
+
[[Category: Illarionov B]]
-
[[Category: Illarionov, B.]]
+
[[Category: Kairies N]]
-
[[Category: Kairies, N.]]
+
[[Category: Schott AK]]
-
[[Category: Schott, A K.]]
+
[[Category: Steinbacher S]]
-
[[Category: Steinbacher, S.]]
+
-
[[Category: Biosynthesis of riboflavin]]
+
-
[[Category: Ligand binding]]
+
-
[[Category: Riboflavin synthase]]
+
-
[[Category: Schizosaccharomyces pombe]]
+
-
[[Category: X-ray structure]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 11:22:13 2008''
+

Current revision

Riboflavin Synthase from S.pombe bound to Carboxyethyllumazine

PDB ID 1kzl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools