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1i08

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(New page: 200px<br /><applet load="1i08" size="450" color="white" frame="true" align="right" spinBox="true" caption="1i08, resolution 2.20&Aring;" /> '''CRYSTAL STRUCTURE AN...)
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[[Image:1i08.jpg|left|200px]]<br /><applet load="1i08" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1i08, resolution 2.20&Aring;" />
 
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'''CRYSTAL STRUCTURE ANALYSIS OF THE H30A MUTANT OF MANGANESE SUPEROXIDE DISMUTASE FROM E. COLI'''<br />
 
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==Overview==
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==CRYSTAL STRUCTURE ANALYSIS OF THE H30A MUTANT OF MANGANESE SUPEROXIDE DISMUTASE FROM E. COLI==
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Among manganese superoxide dismutases, residues His30 and Tyr174 are, highly conserved, forming part of the substrate access funnel in the, active site. These two residues are structurally linked by a strong, hydrogen bond between His30 NE2 from one subunit and Tyr174 OH from the, other subunit of the dimer, forming an important element that bridges the, dimer interface. Mutation of either His30 or Tyr174 in Escherichia coli, MnSOD reduces the superoxide dismutase activity to 30--40% of that of the, wt enzyme, which is surprising, since Y174 is quite remote from the active, site metal center. The 2.2 A resolution X-ray structure of H30A-MnSOD, shows that removing the Tyr174--&gt;His30 hydrogen bond from the acceptor, side results in a significant displacement of the main-chain segment, containing the Y174 residue, with local rearrangement of the protein. The, 1.35 A resolution structure of Y174F-MnSOD shows that disruption of the, same hydrogen bond from the donor side has much greater consequences, with, reorientation of F174 having a domino effect on the neighboring residues, resulting in a major rearrangement of the dimer interface and flipping of, the His30 ring. Spectroscopic studies on H30A, H30N, and Y174F mutants, show that (like the previously characterized Y34F mutant of E. coli MnSOD), all lack the high pH transition of the wt enzyme. This observation, supports assignment of the pH sensitivity of MnSOD to coordination of, hydroxide ion at high pH rather than to ionization of the phenolic group, of Y34. Thus, mutations near the active site, as in the Y34F mutant, as, well as at remote positions, as in Y174F, similarly affect the metal, reactivity and alter the effective pK(a) for hydroxide ion binding. These, results imply that hydrogen bonding of the H30 imidazole N--H group plays, a key role in substrate binding and catalysis.
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<StructureSection load='1i08' size='340' side='right'caption='[[1i08]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1i08]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I08 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1I08 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1i08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i08 OCA], [https://pdbe.org/1i08 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1i08 RCSB], [https://www.ebi.ac.uk/pdbsum/1i08 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1i08 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SODM_ECOLI SODM_ECOLI] Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i0/1i08_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1i08 ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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1I08 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with MN as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1I08 OCA].
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*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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Removing a hydrogen bond in the dimer interface of Escherichia coli manganese superoxide dismutase alters structure and reactivity., Edwards RA, Whittaker MM, Whittaker JW, Baker EN, Jameson GB, Biochemistry. 2001 Apr 17;40(15):4622-32. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11294629 11294629]
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Superoxide dismutase]]
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[[Category: Baker EN]]
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[[Category: Baker, E.N.]]
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[[Category: Edwards RA]]
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[[Category: Edwards, R.A.]]
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[[Category: Jameson GB]]
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[[Category: Jameson, G.B.]]
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[[Category: Whittaker JW]]
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[[Category: Whittaker, J.W.]]
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[[Category: Whittaker MM]]
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[[Category: Whittaker, M.M.]]
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[[Category: MN]]
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[[Category: h30a]]
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[[Category: hydrogen bond]]
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[[Category: manganese superoxide dismutase]]
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[[Category: mutant]]
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[[Category: reactivity]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 16:57:10 2007''
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Current revision

CRYSTAL STRUCTURE ANALYSIS OF THE H30A MUTANT OF MANGANESE SUPEROXIDE DISMUTASE FROM E. COLI

PDB ID 1i08

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