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1l3l

From Proteopedia

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{{Seed}}
 
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[[Image:1l3l.png|left|200px]]
 
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==Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA==
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The line below this paragraph, containing "STRUCTURE_1l3l", creates the "Structure Box" on the page.
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<StructureSection load='1l3l' size='340' side='right'caption='[[1l3l]], [[Resolution|resolution]] 1.66&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1l3l]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L3L FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.66&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LAE:3-OXO-OCTANOIC+ACID+(2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE'>LAE</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_1l3l| PDB=1l3l | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l3l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l3l OCA], [https://pdbe.org/1l3l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l3l RCSB], [https://www.ebi.ac.uk/pdbsum/1l3l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l3l ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/TRAR_RHIRD TRAR_RHIRD] Positive regulation of conjugal transfer of Ti plasmids. TraR activates target genes in the presence of AAI and also activates traR and traI themselves.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l3/1l3l_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1l3l ConSurf].
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<div style="clear:both"></div>
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===Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA===
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==See Also==
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*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]
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__TOC__
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_12087407}}, adds the Publication Abstract to the page
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(as it appears on PubMed at http://www.pubmed.gov), where 12087407 is the PubMed ID number.
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{{ABSTRACT_PUBMED_12087407}}
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==About this Structure==
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1L3L is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3L OCA].
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==Reference==
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Structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA., Zhang RG, Pappas T, Brace JL, Miller PC, Oulmassov T, Molyneaux JM, Anderson JC, Bashkin JK, Winans SC, Joachimiak A, Nature. 2002 Jun 27;417(6892):971-4. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12087407 12087407]
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[[Category: Agrobacterium tumefaciens]]
[[Category: Agrobacterium tumefaciens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Anderson, J C.]]
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[[Category: Anderson JC]]
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[[Category: Bashkin, J K.]]
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[[Category: Bashkin JK]]
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[[Category: Brace, J L.]]
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[[Category: Brace JL]]
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[[Category: Joachimiak, A.]]
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[[Category: Joachimiak A]]
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[[Category: Miller, P C.]]
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[[Category: Miller PC]]
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[[Category: Molyneaux, J M.]]
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[[Category: Molyneaux JM]]
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[[Category: Oulmassov, T.]]
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[[Category: Oulmassov T]]
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[[Category: Pappas, T.]]
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[[Category: Pappas T]]
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[[Category: Winans, S C.]]
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[[Category: Winans SC]]
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[[Category: Zhang, R.]]
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[[Category: Zhang R]]
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[[Category: Alpha/beta/alpha sandwich]]
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[[Category: Asymmetry of the protein-dna complex]]
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[[Category: Helix-turn-helix dna binding motif]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 11:37:44 2008''
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Current revision

Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA

PDB ID 1l3l

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