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- | {{Seed}} | |
- | [[Image:1l3x.png|left|200px]] | |
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- | <!-- | + | ==Solution Structure of Novel Disintegrin Salmosin== |
- | The line below this paragraph, containing "STRUCTURE_1l3x", creates the "Structure Box" on the page.
| + | <StructureSection load='1l3x' size='340' side='right'caption='[[1l3x]]' scene=''> |
- | You may change the PDB parameter (which sets the PDB file loaded into the applet)
| + | == Structural highlights == |
- | or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
| + | <table><tr><td colspan='2'>[[1l3x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gloydius_brevicaudus Gloydius brevicaudus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1iq2 1iq2]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L3X FirstGlance]. <br> |
- | or leave the SCENE parameter empty for the default display.
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
- | -->
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l3x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l3x OCA], [https://pdbe.org/1l3x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l3x RCSB], [https://www.ebi.ac.uk/pdbsum/1l3x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l3x ProSAT]</span></td></tr> |
- | {{STRUCTURE_1l3x| PDB=1l3x | SCENE= }}
| + | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/VM2HS_GLOBR VM2HS_GLOBR] Metalloproteinase hxl-1: snake venom metalloproteinase that impairs hemostasis in the envenomed animal (By similarity).<ref>PMID:9722022</ref> <ref>PMID:9856345</ref> <ref>PMID:10446992</ref> <ref>PMID:10944460</ref> <ref>PMID:14977354</ref> Disintegrin salmosin-1: inhibits GPIIb/GPIIIa (ITGA2B/ITGB3) binding to immobilized fibrinogen with an IC(50) of 2.2 nM and ADP-induced platelet aggregation with an IC(50) of 131 nM, respectively. Inhibits angiogenesis.<ref>PMID:9722022</ref> <ref>PMID:9856345</ref> <ref>PMID:10446992</ref> <ref>PMID:10944460</ref> <ref>PMID:14977354</ref> |
| + | == Evolutionary Conservation == |
| + | [[Image:Consurf_key_small.gif|200px|right]] |
| + | Check<jmol> |
| + | <jmolCheckbox> |
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l3/1l3x_consurf.spt"</scriptWhenChecked> |
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| + | <text>to colour the structure by Evolutionary Conservation</text> |
| + | </jmolCheckbox> |
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1l3x ConSurf]. |
| + | <div style="clear:both"></div> |
| | | |
- | ===Solution Structure of Novel Disintegrin Salmosin=== | + | ==See Also== |
- | | + | *[[Disintegrin|Disintegrin]] |
- | | + | == References == |
- | <!--
| + | <references/> |
- | The line below this paragraph, {{ABSTRACT_PUBMED_14661951}}, adds the Publication Abstract to the page
| + | __TOC__ |
- | (as it appears on PubMed at http://www.pubmed.gov), where 14661951 is the PubMed ID number.
| + | </StructureSection> |
- | -->
| + | [[Category: Gloydius brevicaudus]] |
- | {{ABSTRACT_PUBMED_14661951}}
| + | [[Category: Large Structures]] |
- | | + | [[Category: Lee W]] |
- | ==About this Structure==
| + | [[Category: Shin J]] |
- | 1L3X is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Gloydius_blomhoffi_brevicaudus Gloydius blomhoffi brevicaudus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3X OCA].
| + | |
- | | + | |
- | ==Reference== | + | |
- | Solution structure of a novel disintegrin, salmosin, from Agkistrondon halys venom., Shin J, Hong SY, Chung K, Kang I, Jang Y, Kim DS, Lee W, Biochemistry. 2003 Dec 16;42(49):14408-15. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14661951 14661951]
| + | |
- | [[Category: Gloydius blomhoffi brevicaudus]] | + | |
- | [[Category: Single protein]] | + | |
- | [[Category: Lee, W.]] | + | |
- | [[Category: Shin, J.]] | + | |
- | [[Category: Disintegrin]]
| + | |
- | [[Category: Rgd]]
| + | |
- | [[Category: Snake venome]]
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- | | + | |
- | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 11:39:21 2008''
| + | |
| Structural highlights
Function
VM2HS_GLOBR Metalloproteinase hxl-1: snake venom metalloproteinase that impairs hemostasis in the envenomed animal (By similarity).[1] [2] [3] [4] [5] Disintegrin salmosin-1: inhibits GPIIb/GPIIIa (ITGA2B/ITGB3) binding to immobilized fibrinogen with an IC(50) of 2.2 nM and ADP-induced platelet aggregation with an IC(50) of 131 nM, respectively. Inhibits angiogenesis.[6] [7] [8] [9] [10]
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
See Also
References
- ↑ Kang IC, Chung KH, Lee SJ, Yun Y, Moon HM, Kim DS. Purification and molecular cloning of a platelet aggregation inhibitor from the snake (Agkistrodon halys brevicaudus) venom. Thromb Res. 1998 Jul 15;91(2):65-73. PMID:9722022
- ↑ Park D, Kang I, Kim H, Chung K, Kim DS, Yun Y. Cloning and characterization of novel disintegrins from Agkistrodon halys venom. Mol Cells. 1998 Oct 31;8(5):578-84. PMID:9856345
- ↑ Kang IC, Lee YD, Kim DS. A novel disintegrin salmosin inhibits tumor angiogenesis. Cancer Res. 1999 Aug 1;59(15):3754-60. PMID:10446992
- ↑ Kang IC, Kim DS, Jang Y, Chung KH. Suppressive mechanism of salmosin, a novel disintegrin in B16 melanoma cell metastasis. Biochem Biophys Res Commun. 2000 Aug 18;275(1):169-73. PMID:10944460 doi:10.1006/bbrc.2000.3130
- ↑ Kim SI, Kim KS, Kim HS, Choi MM, Kim DS, Chung KH, Park YS. Inhibition of angiogenesis by salmosin expressed in vitro. Oncol Res. 2004;14(4-5):227-33. PMID:14977354
- ↑ Kang IC, Chung KH, Lee SJ, Yun Y, Moon HM, Kim DS. Purification and molecular cloning of a platelet aggregation inhibitor from the snake (Agkistrodon halys brevicaudus) venom. Thromb Res. 1998 Jul 15;91(2):65-73. PMID:9722022
- ↑ Park D, Kang I, Kim H, Chung K, Kim DS, Yun Y. Cloning and characterization of novel disintegrins from Agkistrodon halys venom. Mol Cells. 1998 Oct 31;8(5):578-84. PMID:9856345
- ↑ Kang IC, Lee YD, Kim DS. A novel disintegrin salmosin inhibits tumor angiogenesis. Cancer Res. 1999 Aug 1;59(15):3754-60. PMID:10446992
- ↑ Kang IC, Kim DS, Jang Y, Chung KH. Suppressive mechanism of salmosin, a novel disintegrin in B16 melanoma cell metastasis. Biochem Biophys Res Commun. 2000 Aug 18;275(1):169-73. PMID:10944460 doi:10.1006/bbrc.2000.3130
- ↑ Kim SI, Kim KS, Kim HS, Choi MM, Kim DS, Chung KH, Park YS. Inhibition of angiogenesis by salmosin expressed in vitro. Oncol Res. 2004;14(4-5):227-33. PMID:14977354
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