This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1lci

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:31, 14 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1lci.png|left|200px]]
 
-
<!--
+
==FIREFLY LUCIFERASE==
-
The line below this paragraph, containing "STRUCTURE_1lci", creates the "Structure Box" on the page.
+
<StructureSection load='1lci' size='340' side='right'caption='[[1lci]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1lci]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Photinus_pyralis Photinus pyralis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LCI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LCI FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lci FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lci OCA], [https://pdbe.org/1lci PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lci RCSB], [https://www.ebi.ac.uk/pdbsum/1lci PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lci ProSAT]</span></td></tr>
-
{{STRUCTURE_1lci| PDB=1lci | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/LUCI_PHOPY LUCI_PHOPY] Produces green light with a wavelength of 562 nm.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lc/1lci_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lci ConSurf].
 +
<div style="clear:both"></div>
-
===FIREFLY LUCIFERASE===
+
==See Also==
-
 
+
*[[Luciferase 3D structures|Luciferase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_8805533}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 8805533 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_8805533}}
+
-
 
+
-
==About this Structure==
+
-
1LCI is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Photinus_pyralis Photinus pyralis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LCI OCA].
+
-
 
+
-
==Reference==
+
-
Crystal structure of firefly luciferase throws light on a superfamily of adenylate-forming enzymes., Conti E, Franks NP, Brick P, Structure. 1996 Mar 15;4(3):287-98. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8805533 8805533]
+
[[Category: Photinus pyralis]]
[[Category: Photinus pyralis]]
-
[[Category: Single protein]]
+
[[Category: Brick P]]
-
[[Category: Brick, P.]]
+
[[Category: Conti E]]
-
[[Category: Conti, E.]]
+
[[Category: Franks NP]]
-
[[Category: Franks, N P.]]
+
-
[[Category: Luminescence]]
+
-
[[Category: Monooxygenase]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Photoprotein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 12:21:16 2008''
+

Current revision

FIREFLY LUCIFERASE

PDB ID 1lci

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools