2jtm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:35, 15 May 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2jtm.png|left|200px]]
 
-
<!--
+
==Solution structure of Sso6901 from Sulfolobus solfataricus P2==
-
The line below this paragraph, containing "STRUCTURE_2jtm", creates the "Structure Box" on the page.
+
<StructureSection load='2jtm' size='340' side='right'caption='[[2jtm]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2jtm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus Saccharolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JTM FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtm OCA], [https://pdbe.org/2jtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jtm RCSB], [https://www.ebi.ac.uk/pdbsum/2jtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jtm ProSAT]</span></td></tr>
-
{{STRUCTURE_2jtm| PDB=2jtm | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CREN7_SACS2 CREN7_SACS2] A highly abundant probable chromatin protein, it binds double-strand DNA without sequence specificity; there is approximately 1 Cren7 molecule for 12 bp of DNA. Constrains negative DNA supercoils, increases DNA stability against thermal denaturation. Binding does not require protein methylation. Binds single-strand DNA weakly.<ref>PMID:18096617</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jt/2jtm_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jtm ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Archaea contain a variety of chromatin proteins consistent with the evolution of different genome packaging mechanisms. Among the two main kingdoms in the Archaea, Euryarchaeota synthesize histone homologs, whereas Crenarchaeota have not been shown to possess a chromatin protein conserved at the kingdom level. We report the identification of Cren7, a novel family of chromatin proteins highly conserved in the Crenarchaeota. A small, basic, methylated and abundant protein, Cren7 displays a higher affinity for double-stranded DNA than for single-stranded DNA, constrains negative DNA supercoils and is associated with genomic DNA in vivo. The solution structure and DNA-binding surface of Cren7 from the hyperthermophilic crenarchaeon Sulfolobus solfataricus were determined by NMR. The protein adopts an SH3-like fold. It interacts with duplex DNA through a beta-sheet and a long flexible loop, presumably resulting in DNA distortions through intercalation of conserved hydrophobic residues into the DNA structure. These data suggest that the crenarchaeal kingdom in the Archaea shares a common strategy in chromatin organization.
-
===Solution structure of Sso6901 from Sulfolobus solfataricus P2===
+
Biochemical and structural characterization of Cren7, a novel chromatin protein conserved among Crenarchaea.,Guo L, Feng Y, Zhang Z, Yao H, Luo Y, Wang J, Huang L Nucleic Acids Res. 2008 Mar;36(4):1129-37. Epub 2007 Dec 20. PMID:18096617<ref>PMID:18096617</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18096617}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2jtm" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18096617 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_18096617}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
2JTM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA].
+
[[Category: Saccharolobus solfataricus]]
-
 
+
[[Category: Feng Y]]
-
==Reference==
+
[[Category: Guo L]]
-
Biochemical and structural characterization of Cren7, a novel chromatin protein conserved among Crenarchaea., Guo L, Feng Y, Zhang Z, Yao H, Luo Y, Wang J, Huang L, Nucleic Acids Res. 2008 Mar;36(4):1129-37. Epub 2007 Dec 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18096617 18096617]
+
[[Category: Huang L]]
-
[[Category: Single protein]]
+
[[Category: Wang J]]
-
[[Category: Sulfolobus solfataricus]]
+
-
[[Category: Feng, Y.]]
+
-
[[Category: Guo, L.]]
+
-
[[Category: Huang, L.]]
+
-
[[Category: Wang, J.]]
+
-
[[Category: Dna binding protein]]
+
-
[[Category: Sh3-like]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 20:59:58 2008''
+

Current revision

Solution structure of Sso6901 from Sulfolobus solfataricus P2

PDB ID 2jtm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2jtm"
Personal tools