3cp2

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{{Seed}}
 
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[[Image:3cp2.png|left|200px]]
 
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==Crystal structure of GidA from E. coli==
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The line below this paragraph, containing "STRUCTURE_3cp2", creates the "Structure Box" on the page.
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<StructureSection load='3cp2' size='340' side='right'caption='[[3cp2]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3cp2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CP2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CP2 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_3cp2| PDB=3cp2 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cp2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cp2 OCA], [https://pdbe.org/3cp2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cp2 RCSB], [https://www.ebi.ac.uk/pdbsum/3cp2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cp2 ProSAT]</span></td></tr>
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</table>
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===Crystal structure of GidA from E. coli===
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== Function ==
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[https://www.uniprot.org/uniprot/MNMG_ECOLI MNMG_ECOLI] NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34.<ref>PMID:11544186</ref> <ref>PMID:17062623</ref> <ref>PMID:9603884</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 18565343 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cp/3cp2_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_18565343}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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3CP2 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CP2 OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cp2 ConSurf].
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<div style="clear:both"></div>
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==Reference==
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== References ==
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Crystal structures of the conserved tRNA-modifying enzyme GidA: implications for its interaction with MnmE and substrate., Meyer S, Scrima A, Versees W, Wittinghofer A, J Mol Biol. 2008 Jul 11;380(3):532-47. Epub 2008 May 7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18565343 18565343]
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<references/>
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[[Category: Escherichia coli]]
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__TOC__
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[[Category: Single protein]]
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</StructureSection>
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[[Category: Meyer, S.]]
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[[Category: Escherichia coli K-12]]
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[[Category: Scrima, A.]]
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[[Category: Large Structures]]
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[[Category: Versees, W.]]
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[[Category: Meyer S]]
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[[Category: Wittinghofer, A.]]
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[[Category: Scrima A]]
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[[Category: Cytoplasm]]
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[[Category: Versees W]]
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[[Category: Fad]]
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[[Category: Wittinghofer A]]
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[[Category: Flavoprotein]]
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[[Category: Nad]]
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[[Category: Oxidoreductase]]
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[[Category: Trna]]
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[[Category: Trna processing]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 22:17:26 2008''
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Current revision

Crystal structure of GidA from E. coli

PDB ID 3cp2

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OCA

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