This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1lzo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:37, 14 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1lzo.png|left|200px]]
 
-
<!--
+
==Plasmodium Falciparum Triosephosphate Isomerase-Phosphoglycolate Complex==
-
The line below this paragraph, containing "STRUCTURE_1lzo", creates the "Structure Box" on the page.
+
<StructureSection load='1lzo' size='340' side='right'caption='[[1lzo]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1lzo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LZO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LZO FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PGA:2-PHOSPHOGLYCOLIC+ACID'>PGA</scene></td></tr>
-
{{STRUCTURE_1lzo| PDB=1lzo | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lzo OCA], [https://pdbe.org/1lzo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lzo RCSB], [https://www.ebi.ac.uk/pdbsum/1lzo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lzo ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/TPIS_PLAFA TPIS_PLAFA]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lz/1lzo_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lzo ConSurf].
 +
<div style="clear:both"></div>
-
===Plasmodium Falciparum Triosephosphate Isomerase-Phosphoglycolate Complex===
+
==See Also==
-
 
+
*[[Triose phosphate isomerase 3D structures|Triose phosphate isomerase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12403619}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 12403619 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_12403619}}
+
-
 
+
-
==About this Structure==
+
-
1LZO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LZO OCA].
+
-
 
+
-
==Reference==
+
-
Structure of the Plasmodium falciparum triosephosphate isomerase-phosphoglycolate complex in two crystal forms: characterization of catalytic loop open and closed conformations in the ligand-bound state., Parthasarathy S, Ravindra G, Balaram H, Balaram P, Murthy MR, Biochemistry. 2002 Nov 5;41(44):13178-88. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12403619 12403619]
+
[[Category: Plasmodium falciparum]]
[[Category: Plasmodium falciparum]]
-
[[Category: Single protein]]
+
[[Category: Balaram H]]
-
[[Category: Triose-phosphate isomerase]]
+
[[Category: Balaram P]]
-
[[Category: Balaram, H.]]
+
[[Category: Murthy MR]]
-
[[Category: Balaram, P.]]
+
[[Category: Parthasarathy S]]
-
[[Category: Murthy, M R.]]
+
-
[[Category: Parthasarathy, S.]]
+
-
[[Category: Loop dynamic]]
+
-
[[Category: Loop open conformation]]
+
-
[[Category: Phosphoglycolate]]
+
-
[[Category: Triosephosphate isomerase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 22:53:29 2008''
+

Current revision

Plasmodium Falciparum Triosephosphate Isomerase-Phosphoglycolate Complex

PDB ID 1lzo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1lzo"
Personal tools