1icx

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(New page: 200px<br /><applet load="1icx" size="450" color="white" frame="true" align="right" spinBox="true" caption="1icx, resolution 1.95&Aring;" /> '''CRYSTAL STRUCTURE OF...)
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[[Image:1icx.jpg|left|200px]]<br /><applet load="1icx" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1icx, resolution 1.95&Aring;" />
 
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'''CRYSTAL STRUCTURE OF PATHOGENESIS-RELATED PROTEIN LLPR10.1A FROM YELLOW LUPINE'''<br />
 
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==Overview==
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==CRYSTAL STRUCTURE OF PATHOGENESIS-RELATED PROTEIN LLPR10.1A FROM YELLOW LUPINE==
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Pathogenesis-related class 10 (PR10) proteins are restricted to the plant, kingdom where they are coded by multigene families and occur at high, levels. In spite of their abundance, their physiological role is obscure, although members of a distantly related subclass (cytokinin-specific, binding proteins) are known to bind plant hormones. PR10 proteins are of, special significance in legume plants where their expression patterns are, related to infection by the symbiotic, nitrogen-fixing bacteria. Here we, present the first crystal structures of classic PR10 proteins representing, two homologues from one subclass in yellow lupine. The general fold is, similar and, as in a birch pollen allergen, consists of a seven-stranded, beta-sheet wrapped around a long C-terminal helix. The mouth of a large, pocket formed between the beta-sheet and the helix seems a likely site for, ligand binding. The shape of the pocket varies because, in variance with, the rigid beta-sheet, the helix shows unusual conformational variability, consisting in bending, disorder, and axial shifting. A surface loop, proximal to the entrance to the internal cavity, shows an unusual, structural conservation and rigidity in contrast to the high glycine, content in its sequence. The loop is different from the so-called, glycine-rich P-loops that bind phosphate groups of nucleotides, but it is, very likely that it does play a role in ligand binding in PR10 proteins.
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<StructureSection load='1icx' size='340' side='right'caption='[[1icx]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1icx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lupinus_luteus Lupinus luteus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ICX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ICX FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1icx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1icx OCA], [https://pdbe.org/1icx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1icx RCSB], [https://www.ebi.ac.uk/pdbsum/1icx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1icx ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/L18A_LUPLU L18A_LUPLU]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ic/1icx_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1icx ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Pathogenesis-related class 10 (PR10) proteins are restricted to the plant kingdom where they are coded by multigene families and occur at high levels. In spite of their abundance, their physiological role is obscure although members of a distantly related subclass (cytokinin-specific binding proteins) are known to bind plant hormones. PR10 proteins are of special significance in legume plants where their expression patterns are related to infection by the symbiotic, nitrogen-fixing bacteria. Here we present the first crystal structures of classic PR10 proteins representing two homologues from one subclass in yellow lupine. The general fold is similar and, as in a birch pollen allergen, consists of a seven-stranded beta-sheet wrapped around a long C-terminal helix. The mouth of a large pocket formed between the beta-sheet and the helix seems a likely site for ligand binding. The shape of the pocket varies because, in variance with the rigid beta-sheet, the helix shows unusual conformational variability consisting in bending, disorder, and axial shifting. A surface loop, proximal to the entrance to the internal cavity, shows an unusual structural conservation and rigidity in contrast to the high glycine content in its sequence. The loop is different from the so-called glycine-rich P-loops that bind phosphate groups of nucleotides, but it is very likely that it does play a role in ligand binding in PR10 proteins.
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==About this Structure==
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Crystal structures of two homologous pathogenesis-related proteins from yellow lupine.,Biesiadka J, Bujacz G, Sikorski MM, Jaskolski M J Mol Biol. 2002 Jun 21;319(5):1223-34. PMID:12079359<ref>PMID:12079359</ref>
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1ICX is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Lupinus_luteus Lupinus luteus]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1ICX OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structures of two homologous pathogenesis-related proteins from yellow lupine., Biesiadka J, Bujacz G, Sikorski MM, Jaskolski M, J Mol Biol. 2002 Jun 21;319(5):1223-34. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12079359 12079359]
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</div>
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<div class="pdbe-citations 1icx" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Lupinus luteus]]
[[Category: Lupinus luteus]]
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[[Category: Single protein]]
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[[Category: Biesiadka J]]
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[[Category: Biesiadka, J.]]
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[[Category: Bujacz G]]
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[[Category: Bujacz, G.]]
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[[Category: Jaskolski M]]
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[[Category: Jaskolski, M.]]
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[[Category: Sikorski MM]]
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[[Category: Sikorski, M.M.]]
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[[Category: 7-stranded beta sheet]]
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[[Category: c-terminal helix]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 17:17:43 2007''
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CRYSTAL STRUCTURE OF PATHOGENESIS-RELATED PROTEIN LLPR10.1A FROM YELLOW LUPINE

PDB ID 1icx

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