1idp

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(New page: 200px<br /><applet load="1idp" size="450" color="white" frame="true" align="right" spinBox="true" caption="1idp, resolution 1.45&Aring;" /> '''Crystal structure of...)
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[[Image:1idp.gif|left|200px]]<br /><applet load="1idp" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1idp, resolution 1.45&Aring;" />
 
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'''Crystal structure of scytalone dehydratase F162A mutant in the unligated state'''<br />
 
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==Overview==
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==Crystal structure of scytalone dehydratase F162A mutant in the unligated state==
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Scytalone dehydratase variant F162A, in which Phe162 in the C-terminal, region was replaced with alanine, was crystallized with polyethylene, glycol 4000. Because the crystal was radiation-sensitive, the diffraction, data were collected at cryogenic temperatures. The crystal belonged to, monoclinic space group P2(1), with unit-cell parameters a = 72.64, b =, 61.30, c = 72.62 A, beta = 120.02 degrees at 37 K. The calculated V(M), value was acceptable when a trimer of the mutant enzyme occupied a, crystallographic asymmetric unit. The resolution limit was extended to, 1.45 A at BL41XU of SPring-8 at 37 K.
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<StructureSection load='1idp' size='340' side='right'caption='[[1idp]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1idp]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyricularia_grisea Pyricularia grisea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IDP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IDP FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1idp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1idp OCA], [https://pdbe.org/1idp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1idp RCSB], [https://www.ebi.ac.uk/pdbsum/1idp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1idp ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SCYD_MAGO7 SCYD_MAGO7] Catalyzes two steps in melanin biosynthesis. From scytalone they are two dehydration steps and one reduction step to yield melanin.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/1idp_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1idp ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Scytalone dehydratase variant F162A, in which Phe162 in the C-terminal region was replaced with alanine, was crystallized with polyethylene glycol 4000. Because the crystal was radiation-sensitive, the diffraction data were collected at cryogenic temperatures. The crystal belonged to monoclinic space group P2(1), with unit-cell parameters a = 72.64, b = 61.30, c = 72.62 A, beta = 120.02 degrees at 37 K. The calculated V(M) value was acceptable when a trimer of the mutant enzyme occupied a crystallographic asymmetric unit. The resolution limit was extended to 1.45 A at BL41XU of SPring-8 at 37 K.
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==About this Structure==
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Crystallization of scytalone dehydratase F162A mutant in the unligated state and a preliminary X-ray diffraction study at 37 K.,Motoyama T, Nakasako M, Yamaguchi I Acta Crystallogr D Biol Crystallogr. 2002 Jan;58(Pt 1):148-50. Epub 2001, Dec 21. PMID:11752795<ref>PMID:11752795</ref>
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1IDP is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Magnaporthe_grisea Magnaporthe grisea]. Active as [http://en.wikipedia.org/wiki/Scytalone_dehydratase Scytalone dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.94 4.2.1.94] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1IDP OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystallization of scytalone dehydratase F162A mutant in the unligated state and a preliminary X-ray diffraction study at 37 K., Motoyama T, Nakasako M, Yamaguchi I, Acta Crystallogr D Biol Crystallogr. 2002 Jan;58(Pt 1):148-50. Epub 2001, Dec 21. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11752795 11752795]
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</div>
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[[Category: Magnaporthe grisea]]
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<div class="pdbe-citations 1idp" style="background-color:#fffaf0;"></div>
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[[Category: Scytalone dehydratase]]
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== References ==
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[[Category: Single protein]]
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<references/>
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[[Category: Motoyama, T.]]
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__TOC__
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[[Category: Nakasako, M.]]
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</StructureSection>
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[[Category: Yamaguchi, I.]]
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[[Category: Large Structures]]
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[[Category: lyase]]
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[[Category: Pyricularia grisea]]
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[[Category: melanine biosynthesis]]
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[[Category: Motoyama T]]
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[[Category: Nakasako M]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 17:19:12 2007''
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[[Category: Yamaguchi I]]

Current revision

Crystal structure of scytalone dehydratase F162A mutant in the unligated state

PDB ID 1idp

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