This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1mkh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:44, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1mkh.png|left|200px]]
 
-
<!--
+
==C-terminal domain of methionyl-tRNA synthetase from Pyrococcus abyssi==
-
The line below this paragraph, containing "STRUCTURE_1mkh", creates the "Structure Box" on the page.
+
<StructureSection load='1mkh' size='340' side='right'caption='[[1mkh]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1mkh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_abyssi Pyrococcus abyssi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MKH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MKH FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.01&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mkh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mkh OCA], [https://pdbe.org/1mkh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mkh RCSB], [https://www.ebi.ac.uk/pdbsum/1mkh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mkh ProSAT]</span></td></tr>
-
{{STRUCTURE_1mkh| PDB=1mkh | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SYM_PYRAB SYM_PYRAB] Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mk/1mkh_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mkh ConSurf].
 +
<div style="clear:both"></div>
-
===C-terminal domain of methionyl-tRNA synthetase from Pyrococcus abyssi===
+
==See Also==
-
 
+
*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12390027}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 12390027 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_12390027}}
+
-
 
+
-
==About this Structure==
+
-
1MKH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_abyssi Pyrococcus abyssi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MKH OCA].
+
-
 
+
-
==Reference==
+
-
Structure and function of the C-terminal domain of methionyl-tRNA synthetase., Crepin T, Schmitt E, Blanquet S, Mechulam Y, Biochemistry. 2002 Oct 29;41(43):13003-11. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12390027 12390027]
+
-
[[Category: Methionine--tRNA ligase]]
+
[[Category: Pyrococcus abyssi]]
[[Category: Pyrococcus abyssi]]
-
[[Category: Single protein]]
+
[[Category: Blanquet S]]
-
[[Category: Blanquet, S.]]
+
[[Category: Crepin T]]
-
[[Category: Crepin, T.]]
+
[[Category: Mechulam Y]]
-
[[Category: Mechulam, Y.]]
+
[[Category: Schmitt E]]
-
[[Category: Schmitt, E.]]
+
-
[[Category: Beta barrel]]
+
-
[[Category: Dimerization domain]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jul 3 00:11:08 2008''
+

Current revision

C-terminal domain of methionyl-tRNA synthetase from Pyrococcus abyssi

PDB ID 1mkh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1mkh"
Personal tools