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- | [[Image:1ikp.jpg|left|200px]]<br /><applet load="1ikp" size="450" color="white" frame="true" align="right" spinBox="true" | |
- | caption="1ikp, resolution 1.45Å" /> | |
- | '''Pseudomonas Aeruginosa Exotoxin A, P201Q, W281A mutant'''<br /> | |
| | | |
- | ==Overview== | + | ==Pseudomonas Aeruginosa Exotoxin A, P201Q, W281A mutant== |
- | Exotoxin A of Pseudomonas aeruginosa asserts its cellular toxicity through, ADP-ribosylation of translation elongation factor 2, predicated on binding, to specific cell surface receptors and intracellular trafficking via a, complex pathway that ultimately results in translocation of an enzymatic, activity into the cytoplasm. In early work, the crystallographic structure, of exotoxin A was determined to 3.0 A resolution, revealing a tertiary, fold having three distinct structural domains; subsequent work has shown, that the domains are individually responsible for the receptor binding, (domain I), transmembrane targeting (domain II), and ADP-ribosyl, transferase (domain III) activities, respectively. Here, we report the, structures of wild-type and W281A mutant toxin proteins at pH 8.0, refined, with data to 1.62 A and 1.45 A resolution, respectively. The refined, models clarify several ionic interactions within structural domains I and, II that may modulate an obligatory conformational change that is induced, by low pH. Proteolytic cleavage by furin is also obligatory for toxicity;, the W281A mutant protein is substantially more susceptible to cleavage, than the wild-type toxin. The tertiary structures of the furin cleavage, sites of the wild-type and W281 mutant toxins are similar; however, the, mutant toxin has significantly higher B-factors around the cleavage site, suggesting that the greater susceptibility to furin cleavage is due to, increased local disorder/flexibility at the site, rather than to, differences in static tertiary structure. Comparison of the refined, structures of full-length toxin, which lacks ADP-ribosyl transferase, activity, to that of the enzymatic domain alone reveals a salt bridge, between Arg467 of the catalytic domain and Glu348 of domain II that, restrains the substrate binding cleft in a conformation that precludes, NAD+ binding. The refined structures of exotoxin A provide precise models, for the design and interpretation of further studies of the mechanism of, intoxication. | + | <StructureSection load='1ikp' size='340' side='right'caption='[[1ikp]], [[Resolution|resolution]] 1.45Å' scene=''> |
| + | == Structural highlights == |
| + | <table><tr><td colspan='2'>[[1ikp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IKP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IKP FirstGlance]. <br> |
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ikp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ikp OCA], [https://pdbe.org/1ikp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ikp RCSB], [https://www.ebi.ac.uk/pdbsum/1ikp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ikp ProSAT]</span></td></tr> |
| + | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/TOXA_PSEAE TOXA_PSEAE] An NAD-dependent ADP-ribosyltransferase (ADPRT). Catalyzes the transfer of the ADP ribosyl moiety of oxidized NAD (NAD(+)) onto eukaryotic elongation factor 2 (eEF-2) thus arresting protein synthesis. Has an LD(50) of 65 ng/ml against the human lung epithelial cell line C38.<ref>PMID:18276581</ref> |
| + | <div style="background-color:#fffaf0;"> |
| + | == Publication Abstract from PubMed == |
| + | Exotoxin A of Pseudomonas aeruginosa asserts its cellular toxicity through ADP-ribosylation of translation elongation factor 2, predicated on binding to specific cell surface receptors and intracellular trafficking via a complex pathway that ultimately results in translocation of an enzymatic activity into the cytoplasm. In early work, the crystallographic structure of exotoxin A was determined to 3.0 A resolution, revealing a tertiary fold having three distinct structural domains; subsequent work has shown that the domains are individually responsible for the receptor binding (domain I), transmembrane targeting (domain II), and ADP-ribosyl transferase (domain III) activities, respectively. Here, we report the structures of wild-type and W281A mutant toxin proteins at pH 8.0, refined with data to 1.62 A and 1.45 A resolution, respectively. The refined models clarify several ionic interactions within structural domains I and II that may modulate an obligatory conformational change that is induced by low pH. Proteolytic cleavage by furin is also obligatory for toxicity; the W281A mutant protein is substantially more susceptible to cleavage than the wild-type toxin. The tertiary structures of the furin cleavage sites of the wild-type and W281 mutant toxins are similar; however, the mutant toxin has significantly higher B-factors around the cleavage site, suggesting that the greater susceptibility to furin cleavage is due to increased local disorder/flexibility at the site, rather than to differences in static tertiary structure. Comparison of the refined structures of full-length toxin, which lacks ADP-ribosyl transferase activity, to that of the enzymatic domain alone reveals a salt bridge between Arg467 of the catalytic domain and Glu348 of domain II that restrains the substrate binding cleft in a conformation that precludes NAD+ binding. The refined structures of exotoxin A provide precise models for the design and interpretation of further studies of the mechanism of intoxication. |
| | | |
- | ==About this Structure==
| + | Refined crystallographic structure of Pseudomonas aeruginosa exotoxin A and its implications for the molecular mechanism of toxicity.,Wedekind JE, Trame CB, Dorywalska M, Koehl P, Raschke TM, McKee M, FitzGerald D, Collier RJ, McKay DB J Mol Biol. 2001 Dec 7;314(4):823-37. PMID:11734000<ref>PMID:11734000</ref> |
- | 1IKP is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa] with CL and NA as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1IKP OCA].
| + | |
| | | |
- | ==Reference==
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
- | Refined crystallographic structure of Pseudomonas aeruginosa exotoxin A and its implications for the molecular mechanism of toxicity., Wedekind JE, Trame CB, Dorywalska M, Koehl P, Raschke TM, McKee M, FitzGerald D, Collier RJ, McKay DB, J Mol Biol. 2001 Dec 7;314(4):823-37. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11734000 11734000]
| + | </div> |
- | [[Category: Pseudomonas aeruginosa]]
| + | <div class="pdbe-citations 1ikp" style="background-color:#fffaf0;"></div> |
- | [[Category: Single protein]]
| + | |
- | [[Category: McKay, D.B.]]
| + | |
- | [[Category: Trame, C.B.]]
| + | |
- | [[Category: Wedekind, J.E.]]
| + | |
- | [[Category: CL]]
| + | |
- | [[Category: NA]]
| + | |
- | [[Category: all 3 exotoxin a domains]]
| + | |
| | | |
- | ''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 17:28:34 2007''
| + | ==See Also== |
| + | *[[Exotoxin 3D structures|Exotoxin 3D structures]] |
| + | == References == |
| + | <references/> |
| + | __TOC__ |
| + | </StructureSection> |
| + | [[Category: Large Structures]] |
| + | [[Category: Pseudomonas aeruginosa]] |
| + | [[Category: McKay DB]] |
| + | [[Category: Trame CB]] |
| + | [[Category: Wedekind JE]] |
| Structural highlights
Function
TOXA_PSEAE An NAD-dependent ADP-ribosyltransferase (ADPRT). Catalyzes the transfer of the ADP ribosyl moiety of oxidized NAD (NAD(+)) onto eukaryotic elongation factor 2 (eEF-2) thus arresting protein synthesis. Has an LD(50) of 65 ng/ml against the human lung epithelial cell line C38.[1]
Publication Abstract from PubMed
Exotoxin A of Pseudomonas aeruginosa asserts its cellular toxicity through ADP-ribosylation of translation elongation factor 2, predicated on binding to specific cell surface receptors and intracellular trafficking via a complex pathway that ultimately results in translocation of an enzymatic activity into the cytoplasm. In early work, the crystallographic structure of exotoxin A was determined to 3.0 A resolution, revealing a tertiary fold having three distinct structural domains; subsequent work has shown that the domains are individually responsible for the receptor binding (domain I), transmembrane targeting (domain II), and ADP-ribosyl transferase (domain III) activities, respectively. Here, we report the structures of wild-type and W281A mutant toxin proteins at pH 8.0, refined with data to 1.62 A and 1.45 A resolution, respectively. The refined models clarify several ionic interactions within structural domains I and II that may modulate an obligatory conformational change that is induced by low pH. Proteolytic cleavage by furin is also obligatory for toxicity; the W281A mutant protein is substantially more susceptible to cleavage than the wild-type toxin. The tertiary structures of the furin cleavage sites of the wild-type and W281 mutant toxins are similar; however, the mutant toxin has significantly higher B-factors around the cleavage site, suggesting that the greater susceptibility to furin cleavage is due to increased local disorder/flexibility at the site, rather than to differences in static tertiary structure. Comparison of the refined structures of full-length toxin, which lacks ADP-ribosyl transferase activity, to that of the enzymatic domain alone reveals a salt bridge between Arg467 of the catalytic domain and Glu348 of domain II that restrains the substrate binding cleft in a conformation that precludes NAD+ binding. The refined structures of exotoxin A provide precise models for the design and interpretation of further studies of the mechanism of intoxication.
Refined crystallographic structure of Pseudomonas aeruginosa exotoxin A and its implications for the molecular mechanism of toxicity.,Wedekind JE, Trame CB, Dorywalska M, Koehl P, Raschke TM, McKee M, FitzGerald D, Collier RJ, McKay DB J Mol Biol. 2001 Dec 7;314(4):823-37. PMID:11734000[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Jorgensen R, Purdy AE, Fieldhouse RJ, Kimber MS, Bartlett DH, Rod Merrill A. Cholix toxin, a novel ADP-ribosylating factor from vibrio cholerae. J Biol Chem. 2008 Feb 25;. PMID:18276581 doi:M710008200
- ↑ Wedekind JE, Trame CB, Dorywalska M, Koehl P, Raschke TM, McKee M, FitzGerald D, Collier RJ, McKay DB. Refined crystallographic structure of Pseudomonas aeruginosa exotoxin A and its implications for the molecular mechanism of toxicity. J Mol Biol. 2001 Dec 7;314(4):823-37. PMID:11734000 doi:10.1006/jmbi.2001.5195
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