Template:STRUCTURE 1mnm
From Proteopedia
(Difference between revisions)
(One intermediate revision not shown.) | |||
Line 1: | Line 1: | ||
- | {{ | + | {{Structure |
- | |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1mnm, resolution 2.25Å (<scene name='initialview01'> | + | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1mnm]], [[Resolution|resolution]] 2.25Å (<scene name='initialview01'>default scene</scene>)}}} |
- | + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1mnm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mnm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1mnm RCSB], [http://www.ebi.ac.uk/pdbsum/1mnm PDBsum]</span> | |
- | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1mnm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mnm OCA], [http://www. | + | |
|FUNCTION={{GO|id=GO:0008301 | text = DNA bending activity}}{{GO|id=GO:0043565 | text = sequence-specific DNA binding}}{{GO|id=GO:0003700 | text = transcription factor activity}}{{GO|id=GO:0003688 | text = DNA replication origin binding}}{{GO|id=GO:0003677 | text = DNA binding}} | |FUNCTION={{GO|id=GO:0008301 | text = DNA bending activity}}{{GO|id=GO:0043565 | text = sequence-specific DNA binding}}{{GO|id=GO:0003700 | text = transcription factor activity}}{{GO|id=GO:0003688 | text = DNA replication origin binding}}{{GO|id=GO:0003677 | text = DNA binding}} | ||
|PROCESS={{GO|id=GO:0006357 | text = regulation of transcription from RNA polymerase II promoter}}{{GO|id=GO:0007049 | text = cell cycle}}{{GO|id=GO:0006350 | text = transcription}}{{GO|id=GO:0006270 | text = DNA replication initiation}}{{GO|id=GO:0006355 | text = regulation of transcription, DNA-dependent}}{{GO|id=GO:0007535 | text = donor selection}}{{GO|id=GO:0045449 | text = regulation of transcription}} | |PROCESS={{GO|id=GO:0006357 | text = regulation of transcription from RNA polymerase II promoter}}{{GO|id=GO:0007049 | text = cell cycle}}{{GO|id=GO:0006350 | text = transcription}}{{GO|id=GO:0006270 | text = DNA replication initiation}}{{GO|id=GO:0006355 | text = regulation of transcription, DNA-dependent}}{{GO|id=GO:0007535 | text = donor selection}}{{GO|id=GO:0045449 | text = regulation of transcription}} | ||
|COMPONENT={{GO|id=GO:0000790 | text = nuclear chromatin}}{{GO|id=GO:0005634 | text = nucleus}} | |COMPONENT={{GO|id=GO:0000790 | text = nuclear chromatin}}{{GO|id=GO:0005634 | text = nucleus}} | ||
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1mnmC00 1Mnmc00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1mnmD00 1Mnmd00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002100 Ipr002100], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001356 Ipr001356], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012287 Ipr012287], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009057 Ipr009057]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00319 PF00319], [http://pfam.sanger.ac.uk/family?acc=PF00046 PF00046]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=40232 d1mnma_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=40233 d1mnmb_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=15983 d1mnmc_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=15984 d1mnmd_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P11746 P11746], [http://ca.expasy.org/cgi-bin/niceprot.pl?Q6B2C0 Q6B2C0]</span> | |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1mnmC00 1Mnmc00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1mnmD00 1Mnmd00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002100 Ipr002100], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001356 Ipr001356], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012287 Ipr012287], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009057 Ipr009057]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00319 PF00319], [http://pfam.sanger.ac.uk/family?acc=PF00046 PF00046]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=40232 d1mnma_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=40233 d1mnmb_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=15983 d1mnmc_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=15984 d1mnmd_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P11746 P11746], [http://ca.expasy.org/cgi-bin/niceprot.pl?Q6B2C0 Q6B2C0]</span> | ||
+ | |uPDB=1MNM|CONSURF={{!}}- | ||
+ | {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | ||
+ | {{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" | ||
+ | {{!}} '''Toggle Conservation Colors:''' | ||
+ | {{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} | ||
+ | Rows = identical sequences: | ||
+ | <jmol> | ||
+ | <jmolButton> | ||
+ | <script></script> | ||
+ | <text>A [x]</text> | ||
+ | <name>jmb_1mnm_A</name> | ||
+ | <title>toggle chain A</title> | ||
+ | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
+ | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
+ | </jmolButton> | ||
+ | </jmol> | ||
+ | |||
+ | <jmol> | ||
+ | <jmolButton> | ||
+ | <script></script> | ||
+ | <text>B [x]</text> | ||
+ | <name>jmb_1mnm_B</name> | ||
+ | <title>toggle chain B</title> | ||
+ | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
+ | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
+ | </jmolButton> | ||
+ | </jmol> | ||
+ | |||
+ | <jmol> | ||
+ | <jmolButton> | ||
+ | <script></script> | ||
+ | <text>C [x]</text> | ||
+ | <name>jmb_1mnm_C</name> | ||
+ | <title>toggle chain C</title> | ||
+ | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
+ | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
+ | </jmolButton> | ||
+ | </jmol> | ||
+ | <jmol> | ||
+ | <jmolButton> | ||
+ | <script></script> | ||
+ | <text>D [x]</text> | ||
+ | <name>jmb_1mnm_D</name> | ||
+ | <title>toggle chain D</title> | ||
+ | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
+ | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
+ | </jmolButton> | ||
+ | </jmol> | ||
+ | |||
+ | <jmol> | ||
+ | <jmolButton> | ||
+ | <script></script> | ||
+ | <text>E [x]</text> | ||
+ | <name>jmb_1mnm_E</name> | ||
+ | <title>toggle chain E</title> | ||
+ | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
+ | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
+ | </jmolButton> | ||
+ | </jmol> | ||
+ | <jmol> | ||
+ | <jmolButton> | ||
+ | <script></script> | ||
+ | <text>F [x]</text> | ||
+ | <name>jmb_1mnm_F</name> | ||
+ | <title>toggle chain F</title> | ||
+ | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
+ | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
+ | </jmolButton> | ||
+ | </jmol> | ||
+ | |||
}} | }} |
Current revision
| |||||||||
1mnm, resolution 2.25Å () | |||||||||
---|---|---|---|---|---|---|---|---|---|
| |||||||||
| |||||||||
Resources: | FirstGlance, OCA, RCSB, PDBsum | ||||||||
Coordinates: | save as pdb, mmCIF, xml |