This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qen

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:15, 21 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2qen.jpg|left|200px]]
 
-
<!--
+
==The walker-type atpase paby2304 of pyrococcus abyssi==
-
The line below this paragraph, containing "STRUCTURE_2qen", creates the "Structure Box" on the page.
+
<StructureSection load='2qen' size='340' side='right'caption='[[2qen]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2qen]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_abyssi Pyrococcus abyssi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QEN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QEN FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
{{STRUCTURE_2qen| PDB=2qen | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qen FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qen OCA], [https://pdbe.org/2qen PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qen RCSB], [https://www.ebi.ac.uk/pdbsum/2qen PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qen ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9V2L3_PYRAB Q9V2L3_PYRAB]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qe/2qen_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qen ConSurf].
 +
<div style="clear:both"></div>
-
===The walker-type atpase paby2304 of pyrococcus abyssi===
+
==See Also==
-
 
+
*[[ATPase 3D structures|ATPase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_16511197}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 16511197 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_16511197}}
+
-
 
+
-
==About this Structure==
+
-
2QEN is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_abyssi Pyrococcus abyssi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QEN OCA].
+
-
 
+
-
==Reference==
+
-
Cloning, purification and crystallization of a Walker-type Pyrococcus abyssi ATPase family member., Uhring M, Bey G, Lecompte O, Cavarelli J, Moras D, Poch O, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Oct 1;61(Pt, 10):925-7. Epub 2005 Sep 30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16511197 16511197]
+
[[Category: Pyrococcus abyssi]]
[[Category: Pyrococcus abyssi]]
-
[[Category: Single protein]]
+
[[Category: Bey G]]
-
[[Category: Bey, G.]]
+
[[Category: Cavarelli J]]
-
[[Category: Cavarelli, J.]]
+
[[Category: Lecompte O]]
-
[[Category: Lecompte, O.]]
+
[[Category: Moras D]]
-
[[Category: Moras, D.]]
+
[[Category: Poch O]]
-
[[Category: Poch, O.]]
+
[[Category: Uhring M]]
-
[[Category: Uhring, M.]]
+
-
[[Category: Atpase]]
+
-
[[Category: Pyrococcus abyssi]]
+
-
[[Category: Unknown function]]
+
-
[[Category: Walker-type]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jul 3 11:19:40 2008''
+

Current revision

The walker-type atpase paby2304 of pyrococcus abyssi

PDB ID 2qen

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2qen"
Personal tools