1inp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1inp" size="450" color="white" frame="true" align="right" spinBox="true" caption="1inp, resolution 2.3&Aring;" /> '''CRYSTAL STRUCTURE OF ...)
Current revision (07:36, 7 February 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1inp.jpg|left|200px]]<br /><applet load="1inp" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1inp, resolution 2.3&Aring;" />
 
-
'''CRYSTAL STRUCTURE OF INOSITOL POLYPHOSPHATE 1-PHOSPHATASE AT 2.3 ANGSTROMS RESOLUTION'''<br />
 
-
==Overview==
+
==CRYSTAL STRUCTURE OF INOSITOL POLYPHOSPHATE 1-PHOSPHATASE AT 2.3 ANGSTROMS RESOLUTION==
-
Bovine inositol polyphosphate 1-phosphatase (1-ptase), M(r) = 44,000, is a, Mg(2+)-dependent/Li(+)-sensitive enzyme that catalyzes the hydrolysis of, the 1-position phosphate from inositol 1,4-bisphosphate and inositol, 1,3,4-trisphosphate. We have determined the crystal structure of, recombinant bovine 1-ptase in the presence of Mg2+ by multiple isomorphous, replacement. The structure is currently refined to an R value of 0.198 for, 15,563 reflections within a resolution range of 8.0-2.3 A. 1-Ptase is, monomeric in the crystal, consistent with biochemical data, and folds into, an alternatively layered alpha/beta/alpha/beta sandwich. The central core, of 1-ptase consists of a six-stranded antiparallel beta sheet, perpendicular to two parallel three-turn alpha-helices. The beta sheet is, flanked by two antiparallel six-turn alpha-helices aligned parallel to the, beta sheet, and the central helices are flanked by a five-stranded largely, parallel beta sheet. Two neighboring metal binding sites are located in, adjacent acidic pockets formed by the intersection of several secondary, structure elements including an unusual kink structure formed by the, "DPIDST" sequence motif. The fold of 1-ptase is similar to that of two, other metal-dependent/Li(+)-sensitive phosphatases, inositol monophosphate, phosphatase and fructose 1,6-bisphosphatase despite minimal amino acid, identity. Comparison of the active-site pockets of these proteins will, likely provide insight into substrate binding and the mechanisms of, metal-dependent catalysis and Li+ inhibition.
+
<StructureSection load='1inp' size='340' side='right'caption='[[1inp]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==About this Structure==
+
<table><tr><td colspan='2'>[[1inp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1INP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1INP FirstGlance]. <br>
-
1INP is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus] with MG as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Inositol-1,4-bisphosphate_1-phosphatase Inositol-1,4-bisphosphate 1-phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.57 3.1.3.57] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1INP OCA].
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
==Reference==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1inp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1inp OCA], [https://pdbe.org/1inp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1inp RCSB], [https://www.ebi.ac.uk/pdbsum/1inp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1inp ProSAT]</span></td></tr>
-
Crystal structure of inositol polyphosphate 1-phosphatase at 2.3-A resolution., York JD, Ponder JW, Chen ZW, Mathews FS, Majerus PW, Biochemistry. 1994 Nov 15;33(45):13164-71. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=7947723 7947723]
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/INPP_BOVIN INPP_BOVIN]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/in/1inp_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1inp ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Bos taurus]]
[[Category: Bos taurus]]
-
[[Category: Inositol-1,4-bisphosphate 1-phosphatase]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Chen Z]]
-
[[Category: Chen, Z.]]
+
[[Category: Majerus PW]]
-
[[Category: Majerus, P.W.]]
+
[[Category: Mathews FS]]
-
[[Category: Mathews, F.S.]]
+
[[Category: Ponder JW]]
-
[[Category: Ponder, J.W.]]
+
[[Category: York JD]]
-
[[Category: York, J.D.]]
+
-
[[Category: MG]]
+
-
[[Category: hydrolase(phosphoric monoester)]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 17:31:40 2007''
+

Current revision

CRYSTAL STRUCTURE OF INOSITOL POLYPHOSPHATE 1-PHOSPHATASE AT 2.3 ANGSTROMS RESOLUTION

PDB ID 1inp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1inp"
Personal tools