3dfh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3dfh", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
Current revision (09:41, 21 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3dfh.jpg|left|200px]]
 
-
<!--
+
==crystal structure of putative mandelate racemase / muconate lactonizing enzyme from Vibrionales bacterium SWAT-3==
-
The line below this paragraph, containing "STRUCTURE_3dfh", creates the "Structure Box" on the page.
+
<StructureSection load='3dfh' size='340' side='right'caption='[[3dfh]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3dfh]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrionales_bacterium_SWAT-3 Vibrionales bacterium SWAT-3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DFH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DFH FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
{{STRUCTURE_3dfh| PDB=3dfh | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dfh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dfh OCA], [https://pdbe.org/3dfh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dfh RCSB], [https://www.ebi.ac.uk/pdbsum/3dfh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dfh ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3dfh TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/IMAND_VIBBS IMAND_VIBBS] Has no detectable activity with D-mannonate and with a panel of 70 other acid sugars (in vitro), in spite of the conservation of the residues that are expected to be important for catalytic activity and cofactor binding. May have evolved a divergent function.<ref>PMID:24697546</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/df/3dfh_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dfh ConSurf].
 +
<div style="clear:both"></div>
-
===crystal structure of putative mandelate racemase / muconate lactonizing enzyme from Vibrionales bacterium SWAT-3===
+
==See Also==
-
 
+
*[[Mandelate racemase|Mandelate racemase]]
-
 
+
== References ==
-
==About this Structure==
+
<references/>
-
3DFH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DFH OCA].
+
__TOC__
-
[[Category: Bacteria]]
+
</StructureSection>
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C.]]
+
[[Category: Vibrionales bacterium SWAT-3]]
-
[[Category: Burley, S K.]]
+
[[Category: Almo SC]]
-
[[Category: Malashkevich, V N.]]
+
[[Category: Burley SK]]
-
[[Category: Meyer, A J.]]
+
[[Category: Malashkevich VN]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
[[Category: Meyer AJ]]
-
[[Category: Sauder, J M.]]
+
[[Category: Sauder JM]]
-
[[Category: Toro, R.]]
+
[[Category: Toro R]]
-
[[Category: Wasserman, S R.]]
+
[[Category: Wasserman SR]]
-
[[Category: Crystal structure]]
+
-
[[Category: Isomerase]]
+
-
[[Category: New york sgx research center for structural genomic]]
+
-
[[Category: New york structural genomix research consortium]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Putative mandelate racemase / muconate lactonizing enzyme]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jul 3 11:34:30 2008''
+

Current revision

crystal structure of putative mandelate racemase / muconate lactonizing enzyme from Vibrionales bacterium SWAT-3

PDB ID 3dfh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3dfh"
Personal tools