This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


428d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:38, 1 March 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:428d.png|left|200px]]
 
-
<!--
+
==STRUCTURE OF THE POTASSIUM FORM OF CGCGAATTCGCG: DNA DEFORMATION BY ELECTROSTATIC COLLAPSE AROUND SMALL CATIONS==
-
The line below this paragraph, containing "STRUCTURE_428d", creates the "Structure Box" on the page.
+
<StructureSection load='428d' size='340' side='right'caption='[[428d]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[428d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=428D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=428D FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>
-
{{STRUCTURE_428d| PDB=428d | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=428d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=428d OCA], [https://pdbe.org/428d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=428d RCSB], [https://www.ebi.ac.uk/pdbsum/428d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=428d ProSAT]</span></td></tr>
-
 
+
</table>
-
===STRUCTURE OF THE POTASSIUM FORM OF CGCGAATTCGCG: DNA DEFORMATION BY ELECTROSTATIC COLLAPSE AROUND SMALL CATIONS===
+
__TOC__
-
 
+
</StructureSection>
-
 
+
[[Category: Large Structures]]
-
<!--
+
[[Category: McFail-Isom L]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_9836580}}, adds the Publication Abstract to the page
+
[[Category: Shui X]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 9836580 is the PubMed ID number.
+
[[Category: Sines CC]]
-
-->
+
[[Category: VanDerveer D]]
-
{{ABSTRACT_PUBMED_9836580}}
+
[[Category: Williams LD]]
-
 
+
-
==About this Structure==
+
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=428D OCA].
+
-
 
+
-
==Reference==
+
-
Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations., Shui X, Sines CC, McFail-Isom L, VanDerveer D, Williams LD, Biochemistry. 1998 Dec 1;37(48):16877-87. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9836580 9836580]
+
-
[[Category: McFail-Isom, L.]]
+
-
[[Category: Shui, X.]]
+
-
[[Category: Sines, C. C.]]
+
-
[[Category: VanDerveer, D.]]
+
-
[[Category: Williams, L. D.]]
+
-
[[Category: Double helix]]
+
-
[[Category: Potassium form]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jul 3 13:18:11 2008''
+

Current revision

STRUCTURE OF THE POTASSIUM FORM OF CGCGAATTCGCG: DNA DEFORMATION BY ELECTROSTATIC COLLAPSE AROUND SMALL CATIONS

PDB ID 428d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools