1r71

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{{Seed}}
 
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[[Image:1r71.png|left|200px]]
 
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==Crystal Structure of the DNA binding domain of KorB in complex with the operator DNA==
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The line below this paragraph, containing "STRUCTURE_1r71", creates the "Structure Box" on the page.
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<StructureSection load='1r71' size='340' side='right'caption='[[1r71]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1r71]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R71 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R71 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene></td></tr>
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{{STRUCTURE_1r71| PDB=1r71 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r71 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r71 OCA], [https://pdbe.org/1r71 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r71 RCSB], [https://www.ebi.ac.uk/pdbsum/1r71 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r71 ProSAT]</span></td></tr>
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</table>
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===Crystal Structure of the DNA binding domain of KorB in complex with the operator DNA===
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== Function ==
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[https://www.uniprot.org/uniprot/KORB2_ECOLX KORB2_ECOLX] In conjunction with KorA, inhibits the transcription of the kilA, trfA and korAB operons. Is also involved in the negative control of the kilB operon.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 15170177 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r7/1r71_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_15170177}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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1R71 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R71 OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r71 ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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Sequence-specific DNA binding determined by contacts outside the helix-turn-helix motif of the ParB homolog KorB., Khare D, Ziegelin G, Lanka E, Heinemann U, Nat Struct Mol Biol. 2004 Jul;11(7):656-63. Epub 2004 May 30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15170177 15170177]
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</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Heinemann, U.]]
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[[Category: Heinemann U]]
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[[Category: Khare, D.]]
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[[Category: Khare D]]
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[[Category: Lanka, E.]]
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[[Category: Lanka E]]
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[[Category: Ziegelin, G.]]
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[[Category: Ziegelin G]]
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[[Category: Heilx-turn-helix motif]]
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[[Category: Incp]]
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[[Category: Parb homologue]]
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[[Category: Plasmid partitioning]]
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[[Category: Protein-dna complex]]
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[[Category: Transcription factor]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 6 00:56:22 2008''
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Current revision

Crystal Structure of the DNA binding domain of KorB in complex with the operator DNA

PDB ID 1r71

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