This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1j1r
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="1j1r" size="450" color="white" frame="true" align="right" spinBox="true" caption="1j1r, resolution 1.90Å" /> '''Structure of Pokewee...) |
|||
| (15 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1j1r.gif|left|200px]]<br /><applet load="1j1r" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1j1r, resolution 1.90Å" /> | ||
| - | '''Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Adenine'''<br /> | ||
| - | == | + | ==Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Adenine== |
| - | + | <StructureSection load='1j1r' size='340' side='right'caption='[[1j1r]], [[Resolution|resolution]] 1.90Å' scene=''> | |
| - | [ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[1j1r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phytolacca_americana Phytolacca americana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J1R FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> |
| - | [[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADE:ADENINE'>ADE</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j1r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1r OCA], [https://pdbe.org/1j1r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j1r RCSB], [https://www.ebi.ac.uk/pdbsum/1j1r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j1r ProSAT]</span></td></tr> | |
| - | [ | + | </table> |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/RIPS_PHYAM RIPS_PHYAM] Inhibits viral infection of plants, and protein synthesis in vitro. | |
| - | + | == Evolutionary Conservation == | |
| - | [ | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [ | + | Check<jmol> |
| - | [ | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j1/1j1r_consurf.spt"</scriptWhenChecked> | |
| - | [[ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [ | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[ | + | </jmolCheckbox> |
| - | [ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j1r ConSurf]. |
| - | + | <div style="clear:both"></div> | |
| - | + | ==See Also== | |
| + | *[[Ribosome inactivating protein 3D structures|Ribosome inactivating protein 3D structures]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Phytolacca americana]] | ||
| + | [[Category: Fujii H]] | ||
| + | [[Category: Hidaka A]] | ||
| + | [[Category: Honjo E]] | ||
| + | [[Category: Kurokawa H]] | ||
| + | [[Category: Mikami B]] | ||
| + | [[Category: Monzingo AF]] | ||
| + | [[Category: Motoshima H]] | ||
| + | [[Category: Robertus JD]] | ||
| + | [[Category: Sato E]] | ||
| + | [[Category: Watanabe K]] | ||
Current revision
Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Adenine
| |||||||||||
Categories: Large Structures | Phytolacca americana | Fujii H | Hidaka A | Honjo E | Kurokawa H | Mikami B | Monzingo AF | Motoshima H | Robertus JD | Sato E | Watanabe K
