2zf8

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{{Seed}}
 
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[[Image:2zf8.jpg|left|200px]]
 
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==Crystal structure of MotY==
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The line below this paragraph, containing "STRUCTURE_2zf8", creates the "Structure Box" on the page.
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<StructureSection load='2zf8' size='340' side='right'caption='[[2zf8]], [[Resolution|resolution]] 2.85&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2zf8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_alginolyticus Vibrio alginolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZF8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZF8 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.85&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zf8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zf8 OCA], [https://pdbe.org/2zf8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zf8 RCSB], [https://www.ebi.ac.uk/pdbsum/2zf8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zf8 ProSAT]</span></td></tr>
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{{STRUCTURE_2zf8| PDB=2zf8 | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/P74944_VIBAL P74944_VIBAL]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zf/2zf8_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zf8 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Rotation of the sodium-driven polar flagellum of Vibrio alginolyticus requires four motor proteins: PomA, PomB, MotX, and MotY. PomA and PomB form a sodium-ion channel in the cytoplasmic membrane that functions as a stator complex to couple sodium-ion flux with torque generation. MotX and MotY are components of the T-ring, which is located beneath the P-ring of the polar flagellar basal body and is involved in incorporation of the PomA/PomB complex into the motor. Here, we describe the determination of the crystal structure of MotY at 2.9 A resolution. The structure shows two distinct domains: an N-terminal domain (MotY-N) and a C-terminal domain (MotY-C). MotY-N has a unique structure. MotY-C contains a putative peptidoglycan-binding motif that is remarkably similar to those of peptidoglycan-binding proteins, such as Pal and RmpM, but this region is disordered in MotY. Motility assay of cells producing either of the MotY-N and MotY-C fragments and subsequent biochemical analyses indicate that MotY-N is essential for association of the stator units around the rotor, whereas MotY-C stabilizes the association by binding to the peptidoglycan layer. Based on these observations, we propose a model for the mechanism of stator assembly around the rotor.
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===Crystal structure of MotY===
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Insights into the stator assembly of the Vibrio flagellar motor from the crystal structure of MotY.,Kojima S, Shinohara A, Terashima H, Yakushi T, Sakuma M, Homma M, Namba K, Imada K Proc Natl Acad Sci U S A. 2008 Jun 3;105(22):7696-701. Epub 2008 May 27. PMID:18505842<ref>PMID:18505842</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_18505842}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2zf8" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 18505842 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18505842}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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2ZF8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_alginolyticus Vibrio alginolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZF8 OCA].
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==Reference==
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Insights into the stator assembly of the Vibrio flagellar motor from the crystal structure of MotY., Kojima S, Shinohara A, Terashima H, Yakushi T, Sakuma M, Homma M, Namba K, Imada K, Proc Natl Acad Sci U S A. 2008 Jun 3;105(22):7696-701. Epub 2008 May 27. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18505842 18505842]
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[[Category: Single protein]]
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[[Category: Vibrio alginolyticus]]
[[Category: Vibrio alginolyticus]]
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[[Category: Homma, M.]]
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[[Category: Homma M]]
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[[Category: Imada, K.]]
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[[Category: Imada K]]
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[[Category: Kojima, S.]]
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[[Category: Kojima S]]
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[[Category: Namba, K.]]
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[[Category: Namba K]]
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[[Category: 2-layer sandwich]]
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[[Category: Beta barrel]]
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[[Category: Flagellum]]
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[[Category: Structural protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 9 10:29:59 2008''
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Current revision

Crystal structure of MotY

PDB ID 2zf8

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