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1j4b

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(New page: 200px<br /><applet load="1j4b" size="450" color="white" frame="true" align="right" spinBox="true" caption="1j4b, resolution 2.50&Aring;" /> '''Recombinant Mouse-Mu...)
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[[Image:1j4b.jpg|left|200px]]<br /><applet load="1j4b" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1j4b, resolution 2.50&Aring;" />
 
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'''Recombinant Mouse-Muscle Adenylosuccinate Synthetase'''<br />
 
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==Overview==
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==Recombinant Mouse-Muscle Adenylosuccinate Synthetase==
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Vertebrates possess two isozymes of adenylosuccinate synthetase. The, acidic isozyme is similar to the synthetase from bacteria and plants, being involved in the de novo biosynthesis of AMP, whereas the basic, isozyme participates in the purine nucleotide cycle. Reported here is the, first instance of overexpression and crystal structure determination of a, basic isozyme of adenylosuccinate synthetase. The recombinant mouse muscle, enzyme purified to homogeneity in milligram quantities exhibits a specific, activity comparable with that of the rat muscle enzyme isolated from, tissue and K(m) parameters for GTP, IMP, and l-aspartate (12, 45, and 140, microm, respectively) similar to those of the enzyme from Escherichia, coli. The mouse muscle and E. coli enzymes have similar polypeptide folds, differing primarily in the conformation of loops, involved in substrate, recognition and stabilization of the transition state. Residues 65-68 of, the muscle isozyme adopt a conformation not observed in any previous, synthetase structure. In its new conformation, segment 65-68 forms, intramolecular hydrogen bonds with residues essential for the recognition, of IMP and, in fact, sterically excludes IMP from the active site., Observed differences in ligand recognition among adenylosuccinate, synthetases may be due in part to conformational variations in the IMP, pocket of the ligand-free enzymes.
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<StructureSection load='1j4b' size='340' side='right'caption='[[1j4b]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1j4b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J4B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J4B FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j4b OCA], [https://pdbe.org/1j4b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j4b RCSB], [https://www.ebi.ac.uk/pdbsum/1j4b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j4b ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PURA1_MOUSE PURA1_MOUSE] Component of the purine nucleotide cycle (PNC), which interconverts IMP and AMP to regulate the nucleotide levels in various tissues, and which contributes to glycolysis and ammoniagenesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP.<ref>PMID:12482871</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j4/1j4b_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j4b ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Vertebrates possess two isozymes of adenylosuccinate synthetase. The acidic isozyme is similar to the synthetase from bacteria and plants, being involved in the de novo biosynthesis of AMP, whereas the basic isozyme participates in the purine nucleotide cycle. Reported here is the first instance of overexpression and crystal structure determination of a basic isozyme of adenylosuccinate synthetase. The recombinant mouse muscle enzyme purified to homogeneity in milligram quantities exhibits a specific activity comparable with that of the rat muscle enzyme isolated from tissue and K(m) parameters for GTP, IMP, and l-aspartate (12, 45, and 140 microm, respectively) similar to those of the enzyme from Escherichia coli. The mouse muscle and E. coli enzymes have similar polypeptide folds, differing primarily in the conformation of loops, involved in substrate recognition and stabilization of the transition state. Residues 65-68 of the muscle isozyme adopt a conformation not observed in any previous synthetase structure. In its new conformation, segment 65-68 forms intramolecular hydrogen bonds with residues essential for the recognition of IMP and, in fact, sterically excludes IMP from the active site. Observed differences in ligand recognition among adenylosuccinate synthetases may be due in part to conformational variations in the IMP pocket of the ligand-free enzymes.
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==About this Structure==
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Recombinant mouse muscle adenylosuccinate synthetase: overexpression, kinetics, and crystal structure.,Iancu CV, Borza T, Choe JY, Fromm HJ, Honzatko RB J Biol Chem. 2001 Nov 9;276(45):42146-52. Epub 2001 Sep 17. PMID:11560929<ref>PMID:11560929</ref>
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1J4B is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Active as [http://en.wikipedia.org/wiki/Adenylosuccinate_synthase Adenylosuccinate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.4.4 6.3.4.4] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1J4B OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Recombinant mouse muscle adenylosuccinate synthetase: overexpression, kinetics, and crystal structure., Iancu CV, Borza T, Choe JY, Fromm HJ, Honzatko RB, J Biol Chem. 2001 Nov 9;276(45):42146-52. Epub 2001 Sep 17. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11560929 11560929]
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</div>
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[[Category: Adenylosuccinate synthase]]
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<div class="pdbe-citations 1j4b" style="background-color:#fffaf0;"></div>
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[[Category: Mus musculus]]
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[[Category: Single protein]]
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[[Category: Borza, T.]]
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[[Category: Choe, J.Y.]]
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[[Category: Fromm, H.J.]]
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[[Category: Honzatko, R.B.]]
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[[Category: Iancu, C.V.]]
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[[Category: gtp-hydrolyzing enzymes]]
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[[Category: ligase]]
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[[Category: purine nucleotide cycle]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 17:55:37 2007''
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==See Also==
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*[[Adenylosuccinate synthetase 3D structures|Adenylosuccinate synthetase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Mus musculus]]
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[[Category: Borza T]]
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[[Category: Choe JY]]
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[[Category: Fromm HJ]]
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[[Category: Honzatko RB]]
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[[Category: Iancu CV]]

Current revision

Recombinant Mouse-Muscle Adenylosuccinate Synthetase

PDB ID 1j4b

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