This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ts6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:44, 1 May 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ts6.png|left|200px]]
 
-
<!--
+
==Structure of the pB2 intermediate from time-resolved Laue crystallography==
-
The line below this paragraph, containing "STRUCTURE_1ts6", creates the "Structure Box" on the page.
+
<StructureSection load='1ts6' size='340' side='right'caption='[[1ts6]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ts6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TS6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TS6 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>
-
{{STRUCTURE_1ts6| PDB=1ts6 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ts6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ts6 OCA], [https://pdbe.org/1ts6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ts6 RCSB], [https://www.ebi.ac.uk/pdbsum/1ts6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ts6 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Structure of the pB2 intermediate from time-resolved Laue crystallography===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/PYP_HALHA PYP_HALHA] Photoactive blue light protein. Probably functions as a photoreceptor for a negative phototaxis response.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_15870207}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15870207 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ts/1ts6_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_15870207}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1TS6 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TS6 OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ts6 ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds., Ihee H, Rajagopal S, Srajer V, Pahl R, Anderson S, Schmidt M, Schotte F, Anfinrud PA, Wulff M, Moffat K, Proc Natl Acad Sci U S A. 2005 May 17;102(20):7145-50. Epub 2005 May 3. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15870207 15870207]
+
</StructureSection>
[[Category: Halorhodospira halophila]]
[[Category: Halorhodospira halophila]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Anderson, S.]]
+
[[Category: Anderson S]]
-
[[Category: Anfinrud, P A.]]
+
[[Category: Anfinrud PA]]
-
[[Category: Ihee, H.]]
+
[[Category: Ihee H]]
-
[[Category: Moffat, K.]]
+
[[Category: Moffat K]]
-
[[Category: Pahl, R.]]
+
[[Category: Pahl R]]
-
[[Category: Rajagopal, S.]]
+
[[Category: Rajagopal S]]
-
[[Category: Schmidt, M.]]
+
[[Category: Schmidt M]]
-
[[Category: Schotte, F.]]
+
[[Category: Schotte F]]
-
[[Category: Srajer, V.]]
+
[[Category: Srajer V]]
-
[[Category: Wulff, M.]]
+
[[Category: Wulff M]]
-
[[Category: Photoreceptor]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jul 10 12:34:19 2008''
+

Current revision

Structure of the pB2 intermediate from time-resolved Laue crystallography

PDB ID 1ts6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ts6"
Personal tools