This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1s9u

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:29, 1 May 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1s9u.png|left|200px]]
 
-
<!--
+
==Atomic structure of a putative anaerobic dehydrogenase component==
-
The line below this paragraph, containing "STRUCTURE_1s9u", creates the "Structure Box" on the page.
+
<StructureSection load='1s9u' size='340' side='right'caption='[[1s9u]], [[Resolution|resolution]] 1.38&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1s9u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S9U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1S9U FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.38&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1s9u| PDB=1s9u | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1s9u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s9u OCA], [https://pdbe.org/1s9u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1s9u RCSB], [https://www.ebi.ac.uk/pdbsum/1s9u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1s9u ProSAT], [https://www.topsan.org/Proteins/MCSG/1s9u TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Atomic structure of a putative anaerobic dehydrogenase component===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/DMSD_SALTY DMSD_SALTY] Required for biogenesis/assembly of DMSO reductase, but not for the interaction of the DmsA signal peptide with the Tat system. May be part of a chaperone cascade complex that facilitates a folding-maturation pathway for the substrate protein (By similarity).[HAMAP-Rule:MF_00940]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_18175314}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18175314 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/s9/1s9u_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_18175314}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1S9U is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium_lt2 Salmonella typhimurium lt2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S9U OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1s9u ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
The 1.38 A crystal structure of DmsD protein from Salmonella typhimurium, a proofreading chaperone on the Tat pathway., Qiu Y, Zhang R, Binkowski TA, Tereshko V, Joachimiak A, Kossiakoff A, Proteins. 2008 May 1;71(2):525-33. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18175314 18175314]
+
</StructureSection>
-
[[Category: Salmonella typhimurium lt2]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
-
[[Category: Collart, F.]]
+
[[Category: Collart F]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Joachimiak A]]
-
[[Category: Kim, Y.]]
+
[[Category: Kim Y]]
-
[[Category: Kossiakoff, A.]]
+
[[Category: Kossiakoff A]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Qiu Y]]
-
[[Category: Qiu, Y.]]
+
[[Category: Tereshko V]]
-
[[Category: Tereshko, V.]]
+
[[Category: Zhang R]]
-
[[Category: Zhang, R.]]
+
-
[[Category: Anaerobic dehydrogenases component]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Midwest center for structural genomic]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 23 10:06:42 2008''
+

Current revision

Atomic structure of a putative anaerobic dehydrogenase component

PDB ID 1s9u

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1s9u"
Personal tools