2vdt

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{{Seed}}
 
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[[Image:2vdt.png|left|200px]]
 
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==Crystallographic structure of Levansucrase from Bacillus subtilis mutant S164A==
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The line below this paragraph, containing "STRUCTURE_2vdt", creates the "Structure Box" on the page.
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<StructureSection load='2vdt' size='340' side='right'caption='[[2vdt]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2vdt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VDT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VDT FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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{{STRUCTURE_2vdt| PDB=2vdt | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vdt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vdt OCA], [https://pdbe.org/2vdt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vdt RCSB], [https://www.ebi.ac.uk/pdbsum/2vdt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vdt ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SACB_BACSU SACB_BACSU]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/2vdt_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vdt ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Levansucrases (LS) are fructosyltransferases (FTFs) belonging to family 68 of glycoside hydrolases (GH68) using sucrose as substrate to synthesize levan, a fructose polymer. From a multiple sequence analysis of GH68 family proteins, nine residues were selected and their role in acceptor and product specificity, as well as in biochemical Bacillus subtilis LS properties, was investigated. A product specificity modification was obtained with mutants Y429N and R433A that no longer produce levan but exclusively oligosaccharides. An effect of the mutation S164A was observed on enzyme stability and kinetic behavior; this mutation also induces a levan activation effect that enhances the reaction rate. We report the crystallographic structure of this mutant and found that S164 is an important residue to maintain the nucleophile position in the active site. We also found evidence of the important role of Y429 in acceptor specificity: this is a key residue coordinating the sucrose position in the catalytic domain-binding pocket. Some of these mutations resulted in LS with a broad range of specificities and new biochemical properties.
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===CRYSTALLOGRAPHIC STRUCTURE OF LEVANSUCRASE FROM BACILLUS SUBTILIS MUTANT S164A===
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Selected mutations in Bacillus subtilis levansucrase semi-conserved regions affecting its biochemical properties.,Ortiz-Soto ME, Rivera M, Rudino-Pinera E, Olvera C, Lopez-Munguia A Protein Eng Des Sel. 2008 Oct;21(10):589-95. Epub 2008 Jul 1. PMID:18596022<ref>PMID:18596022</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_18596022}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2vdt" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 18596022 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18596022}}
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__TOC__
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</StructureSection>
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==About this Structure==
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2VDT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VDT OCA].
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==Reference==
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Selected mutations in Bacillus subtilis levansucrase semi-conserved regions affecting its biochemical properties., Ortiz-Soto ME, Rivera M, Rudino-Pinera E, Olvera C, Lopez-Munguia A, Protein Eng Des Sel. 2008 Jul 1;. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18596022 18596022]
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[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
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[[Category: Levansucrase]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Lopez-Munguia A]]
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[[Category: Lopez-Munguia, A.]]
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[[Category: Olvera C]]
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[[Category: Olvera, C.]]
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[[Category: Ortiz-Soto ME]]
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[[Category: Ortiz-Soto, M E.]]
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[[Category: Rivera M]]
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[[Category: Rivera, M.]]
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[[Category: Rudino-Pinera E]]
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[[Category: Rudino-Pinera, E.]]
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[[Category: Beta-propeller]]
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[[Category: Glycoside hydrolase]]
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[[Category: Glycosyltransferase]]
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[[Category: Levan]]
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[[Category: Levansucrase]]
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[[Category: Secreted]]
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[[Category: Transferase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 23 10:09:44 2008''
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Current revision

Crystallographic structure of Levansucrase from Bacillus subtilis mutant S164A

PDB ID 2vdt

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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