This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1bkv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:56, 3 April 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1bkv.png|left|200px]]
 
-
<!--
+
==COLLAGEN==
-
The line below this paragraph, containing "STRUCTURE_1bkv", creates the "Structure Box" on the page.
+
<StructureSection load='1bkv' size='340' side='right'caption='[[1bkv]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1bkv]] is a 3 chain structure. The April 2000 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Collagen'' by David S. Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2000_4 10.2210/rcsb_pdb/mom_2000_4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BKV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BKV FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
-
{{STRUCTURE_1bkv| PDB=1bkv | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bkv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bkv OCA], [https://pdbe.org/1bkv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bkv RCSB], [https://www.ebi.ac.uk/pdbsum/1bkv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bkv ProSAT]</span></td></tr>
-
 
+
</table>
-
===COLLAGEN===
+
__TOC__
-
 
+
</StructureSection>
-
 
+
-
<!--
+
-
The line below this paragraph, {{ABSTRACT_PUBMED_10331873}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 10331873 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_10331873}}
+
-
 
+
-
==About this Structure==
+
-
Additional information on 1BKV is available in a page on [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb4_1.html Collagen] at the RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BKV OCA].
+
-
 
+
-
==Reference==
+
-
Sequence dependent conformational variations of collagen triple-helical structure., Kramer RZ, Bella J, Mayville P, Brodsky B, Berman HM, Nat Struct Biol. 1999 May;6(5):454-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10331873 10331873]
+
[[Category: Collagen]]
[[Category: Collagen]]
-
[[Category: Bella, J.]]
+
[[Category: Large Structures]]
-
[[Category: Berman, H M.]]
+
[[Category: RCSB PDB Molecule of the Month]]
-
[[Category: Brodsky, B.]]
+
[[Category: Bella J]]
-
[[Category: Kramer, R Z.]]
+
[[Category: Berman HM]]
-
[[Category: Mayville, P.]]
+
[[Category: Brodsky B]]
-
[[Category: Collagen]]
+
[[Category: Kramer RZ]]
-
[[Category: Hydrogen bonding]]
+
[[Category: Mayville P]]
-
[[Category: Hydroxyproline]]
+
-
[[Category: Triple helix]]
+
-
[[Category: Type iii collagen]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 23 10:56:13 2008''
+

Current revision

COLLAGEN

PDB ID 1bkv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools