2vxf

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(New page: '''Unreleased structure''' The entry 2vxf is ON HOLD Authors: Tritschler, F., Coles, M., Truffault, V. Description: SOLUTION STRUCTURE OF THE LSM DOMAIN OF DROSOPHILA MELANOGASTER TRAL...)
Current revision (21:03, 20 October 2021) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 2vxf is ON HOLD
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==Solution structure of the LSm-domain of zebrafish RAP55==
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<StructureSection load='2vxf' size='340' side='right'caption='[[2vxf]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2vxf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Brachidanio_rerio Brachidanio rerio]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VXF FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2vxe|2vxe]]</div></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vxf OCA], [https://pdbe.org/2vxf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vxf RCSB], [https://www.ebi.ac.uk/pdbsum/2vxf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vxf ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vx/2vxf_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vxf ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Trailer Hitch (Tral or LSm15) and enhancer of decapping-3 (EDC3 or LSm16) are conserved eukaryotic members of the (L)Sm (Sm and Like-Sm) protein family. They have a similar domain organization, characterized by an N-terminal LSm domain and a central FDF motif; however, in Tral, the FDF motif is flanked by regions rich in charged residues, whereas in EDC3 the FDF motif is followed by a YjeF_N domain. We show that in Drosophila cells, Tral and EDC3 specifically interact with the decapping activator DCP1 and the DEAD-box helicase Me31B. Nevertheless, only Tral associates with the translational repressor CUP, whereas EDC3 associates with the decapping enzyme DCP2. Like EDC3, Tral interacts with DCP1 and localizes to mRNA processing bodies (P bodies) via the LSm domain. This domain remains monomeric in solution and adopts a divergent Sm fold that lacks the characteristic N-terminal alpha-helix, as determined by nuclear magnetic resonance analyses. Mutational analysis revealed that the structural integrity of the LSm domain is required for Tral both to interact with DCP1 and CUP and to localize to P-bodies. Furthermore, both Tral and EDC3 interact with the C-terminal RecA-like domain of Me31B through their FDF motifs. Together with previous studies, our results show that Tral and EDC3 are structurally related and use a similar mode to associate with common partners in distinct protein complexes.
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Authors: Tritschler, F., Coles, M., Truffault, V.
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Similar modes of interaction enable Trailer Hitch and EDC3 to associate with DCP1 and Me31B in distinct protein complexes.,Tritschler F, Eulalio A, Helms S, Schmidt S, Coles M, Weichenrieder O, Izaurralde E, Truffault V Mol Cell Biol. 2008 Nov;28(21):6695-708. Epub 2008 Sep 2. PMID:18765641<ref>PMID:18765641</ref>
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Description: SOLUTION STRUCTURE OF THE LSM DOMAIN OF DROSOPHILA MELANOGASTER TRAL ( TRAILER HITCH)
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2vxf" style="background-color:#fffaf0;"></div>
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 23 12:10:05 2008''
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==See Also==
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*[[Sm-like protein|Sm-like protein]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Brachidanio rerio]]
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[[Category: Large Structures]]
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[[Category: Coles, M]]
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[[Category: Tritschler, F]]
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[[Category: Truffault, V]]
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[[Category: Car-1]]
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[[Category: Decapping]]
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[[Category: Edc3]]
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[[Category: Lsm protein]]
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[[Category: Mrna decay]]
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[[Category: P-body]]
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[[Category: Rap55]]
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[[Category: Transcription]]
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[[Category: Translational repression]]

Current revision

Solution structure of the LSm-domain of zebrafish RAP55

PDB ID 2vxf

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