This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3dm3
From Proteopedia
(Difference between revisions)
| (9 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of a domain of a Replication factor A protein, from Methanocaldococcus jannaschii. NorthEast Structural Genomics target MjR118E== | |
| + | <StructureSection load='3dm3' size='340' side='right'caption='[[3dm3]], [[Resolution|resolution]] 2.40Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3dm3]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DM3 FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dm3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm3 OCA], [https://pdbe.org/3dm3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dm3 RCSB], [https://www.ebi.ac.uk/pdbsum/3dm3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dm3 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/RPA_METJA RPA_METJA] Probably plays an essential for replication of the chromosome, DNA recombination and repair (By similarity). | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dm3_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dm3 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| - | + | *[[Single-stranded DNA-binding protein 3D structures|Single-stranded DNA-binding protein 3D structures]] | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | + | [[Category: Large Structures]] | |
| + | [[Category: Methanocaldococcus jannaschii]] | ||
| + | [[Category: Acton TB]] | ||
| + | [[Category: Ciccosanti C]] | ||
| + | [[Category: Everett JK]] | ||
| + | [[Category: Hunt JF]] | ||
| + | [[Category: Janjua H]] | ||
| + | [[Category: Maglaqui M]] | ||
| + | [[Category: Montelione GT]] | ||
| + | [[Category: Nair R]] | ||
| + | [[Category: Rost B]] | ||
| + | [[Category: Seetharaman J]] | ||
| + | [[Category: Su M]] | ||
| + | [[Category: Tong L]] | ||
| + | [[Category: Xiao R]] | ||
Current revision
Crystal structure of a domain of a Replication factor A protein, from Methanocaldococcus jannaschii. NorthEast Structural Genomics target MjR118E
| |||||||||||
Categories: Large Structures | Methanocaldococcus jannaschii | Acton TB | Ciccosanti C | Everett JK | Hunt JF | Janjua H | Maglaqui M | Montelione GT | Nair R | Rost B | Seetharaman J | Su M | Tong L | Xiao R
