This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3doi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: '''Unreleased structure''' The entry 3doi is ON HOLD until Paper Publication Authors: Levisson, M., Sun, L., Hendriks, S., Swinkels, P., Akveld, T., Bultema, J.B., Barendregt, A., van d...)
Current revision (08:24, 20 March 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 3doi is ON HOLD until Paper Publication
+
==Crystal Structure of a Thermostable Esterase complex with paraoxon==
-
 
+
<StructureSection load='3doi' size='340' side='right'caption='[[3doi]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
-
Authors: Levisson, M., Sun, L., Hendriks, S., Swinkels, P., Akveld, T., Bultema, J.B., Barendregt, A., van den Heuvel, R.H.H., Dijkstra, B.W., van der Oost, J., Kengen, S.W.M.
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3doi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DOI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DOI FirstGlance]. <br>
-
Description: Crystal Structure of a Thermostable Esterase complex with paraoxon
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DEP:DIETHYL+PHOSPHONATE'>DEP</scene></td></tr>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 23 12:15:51 2008''
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3doi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3doi OCA], [https://pdbe.org/3doi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3doi RCSB], [https://www.ebi.ac.uk/pdbsum/3doi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3doi ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9WXP0_THEMA Q9WXP0_THEMA]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/do/3doi_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3doi ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thermotoga maritima]]
 +
[[Category: Dijkstra BW]]
 +
[[Category: Hendriks S]]
 +
[[Category: Kengen SWM]]
 +
[[Category: Levisson M]]
 +
[[Category: Sun L]]
 +
[[Category: Van der Oost J]]

Current revision

Crystal Structure of a Thermostable Esterase complex with paraoxon

PDB ID 3doi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools