1joe

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1joe" size="450" color="white" frame="true" align="right" spinBox="true" caption="1joe, resolution 2.4&Aring;" /> '''Crystal Structure of ...)
Current revision (07:41, 7 February 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1joe.jpg|left|200px]]<br /><applet load="1joe" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1joe, resolution 2.4&Aring;" />
 
-
'''Crystal Structure of Autoinducer-2 Production Protein (LuxS) from Heamophilus influenzae'''<br />
 
-
==About this Structure==
+
==Crystal Structure of Autoinducer-2 Production Protein (LuxS) from Heamophilus influenzae==
-
1JOE is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Haemophilus_influenzae Haemophilus influenzae] with HG and ZN as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1JOE OCA].
+
<StructureSection load='1joe' size='340' side='right'caption='[[1joe]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
[[Category: Haemophilus influenzae]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[1joe]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae_Rd_KW20 Haemophilus influenzae Rd KW20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JOE FirstGlance]. <br>
-
[[Category: Chen, C.C.H.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
[[Category: Eisenstein, E.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
[[Category: Herzberg, O.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1joe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1joe OCA], [https://pdbe.org/1joe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1joe RCSB], [https://www.ebi.ac.uk/pdbsum/1joe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1joe ProSAT]</span></td></tr>
-
[[Category: Lehmann, C.]]
+
</table>
-
[[Category: Lim, K.]]
+
== Function ==
-
[[Category: Parsons, J.F.]]
+
[https://www.uniprot.org/uniprot/LUXS_HAEIN LUXS_HAEIN] Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD).
-
[[Category: S2F, Structure.2.Function.Project.]]
+
== Evolutionary Conservation ==
-
[[Category: Tempczyk, A.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: HG]]
+
Check<jmol>
-
[[Category: ZN]]
+
<jmolCheckbox>
-
[[Category: hi0491]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jo/1joe_consurf.spt"</scriptWhenChecked>
-
[[Category: luxs]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: s2f]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: structural genomics]]
+
</jmolCheckbox>
-
[[Category: structure 2 function project]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1joe ConSurf].
-
[[Category: twinned crystal]]
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 18:25:20 2007''
+
</StructureSection>
 +
[[Category: Haemophilus influenzae Rd KW20]]
 +
[[Category: Large Structures]]
 +
[[Category: Chen CCH]]
 +
[[Category: Eisenstein E]]
 +
[[Category: Herzberg O]]
 +
[[Category: Lehmann C]]
 +
[[Category: Lim K]]
 +
[[Category: Parsons JF]]
 +
[[Category: Tempczyk A]]

Current revision

Crystal Structure of Autoinducer-2 Production Protein (LuxS) from Heamophilus influenzae

PDB ID 1joe

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1joe"
Personal tools