This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2o9c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:53, 13 March 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2o9c.png|left|200px]]
 
-
<!--
+
==Crystal Structure of Bacteriophytochrome chromophore binding domain at 1.45 angstrom resolution==
-
The line below this paragraph, containing "STRUCTURE_2o9c", creates the "Structure Box" on the page.
+
<StructureSection load='2o9c' size='340' side='right'caption='[[2o9c]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2o9c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O9C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O9C FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LBV:3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4-METHYL-PYRROL-1-IUM-2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3-ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2-YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC+ACID'>LBV</scene></td></tr>
-
{{STRUCTURE_2o9c| PDB=2o9c | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o9c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o9c OCA], [https://pdbe.org/2o9c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o9c RCSB], [https://www.ebi.ac.uk/pdbsum/2o9c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o9c ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of Bacteriophytochrome chromophore binding domain at 1.45 angstrom resolution===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/BPHY_DEIRA BPHY_DEIRA] Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift for the far-red maximum. Could also absorb green light. May participate in regulating pigment synthesis like the carotenoid deinoxanthin which could protect the bacterium from intense visible light.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_17322301}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 17322301 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o9/2o9c_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_17322301}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2O9C is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O9C OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o9c ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
High resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution., Wagner JR, Zhang J, Brunzelle JS, Vierstra RD, Forest KT, J Biol Chem. 2007 Apr 20;282(16):12298-309. Epub 2007 Feb 23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17322301 17322301]
+
</StructureSection>
[[Category: Deinococcus radiodurans]]
[[Category: Deinococcus radiodurans]]
-
[[Category: Histidine kinase]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Brunzelle JS]]
-
[[Category: Brunzelle, J S.]]
+
[[Category: Forest KT]]
-
[[Category: Forest, K T.]]
+
[[Category: Vierstra RD]]
-
[[Category: Vierstra, R D.]]
+
[[Category: Wagner JR]]
-
[[Category: Wagner, J R]]
+
-
[[Category: Biliverdin]]
+
-
[[Category: Figure-of-eight knot]]
+
-
[[Category: Gaf]]
+
-
[[Category: Pa]]
+
-
[[Category: Phytochrome chromophore]]
+
-
[[Category: Phytochromobilin]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 12:45:03 2008''
+

Current revision

Crystal Structure of Bacteriophytochrome chromophore binding domain at 1.45 angstrom resolution

PDB ID 2o9c

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2o9c"
Personal tools