1jqj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1jqj" size="450" color="white" frame="true" align="right" spinBox="true" caption="1jqj, resolution 2.9&Aring;" /> '''Mechanism of Processi...)
Current revision (07:41, 7 February 2024) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1jqj.jpg|left|200px]]<br /><applet load="1jqj" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1jqj, resolution 2.9&Aring;" />
 
-
'''Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of the beta-delta complex'''<br />
 
-
==Overview==
+
==Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of the beta-delta complex==
-
The dimeric ring-shaped sliding clamp of E. coli DNA polymerase III (beta, subunit, homolog of eukaryotic PCNA) is loaded onto DNA by the clamp, loader gamma complex (homolog of eukaryotic Replication Factor C, RFC)., The delta subunit of the gamma complex binds to the beta ring and opens, it. The crystal structure of a beta:delta complex shows that delta, which, is structurally related to the delta' and gamma subunits of the gamma, complex, is a molecular wrench that induces or traps a conformational, change in beta such that one of its dimer interfaces is destabilized., Structural comparisons and molecular dynamics simulations suggest a, spring-loaded mechanism in which the beta ring opens spontaneously once a, dimer interface is perturbed by the delta wrench.
+
<StructureSection load='1jqj' size='340' side='right'caption='[[1jqj]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1jqj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JQJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JQJ FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jqj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jqj OCA], [https://pdbe.org/1jqj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jqj RCSB], [https://www.ebi.ac.uk/pdbsum/1jqj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jqj ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DPO3B_ECOLI DPO3B_ECOLI] DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP-independent) along duplex DNA.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jq/1jqj_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jqj ConSurf].
 +
<div style="clear:both"></div>
-
==About this Structure==
+
==See Also==
-
1JQJ is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Active as [http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1JQJ OCA].
+
*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III., Jeruzalmi D, Yurieva O, Zhao Y, Young M, Stewart J, Hingorani M, O'Donnell M, Kuriyan J, Cell. 2001 Aug 24;106(4):417-28. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11525728 11525728]
+
-
[[Category: DNA-directed DNA polymerase]]
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Protein complex]]
+
[[Category: Large Structures]]
-
[[Category: Donnell, M.O.]]
+
[[Category: Hingorani M]]
-
[[Category: Hingorani, M.]]
+
[[Category: Jeruzalmi D]]
-
[[Category: Jeruzalmi, D.]]
+
[[Category: Kuriyan J]]
-
[[Category: Kuriyan, J.]]
+
[[Category: O'Donnell M]]
-
[[Category: Stewart, J.]]
+
[[Category: Stewart J]]
-
[[Category: Young, M.]]
+
[[Category: Young M]]
-
[[Category: Yurieva, O.]]
+
[[Category: Yurieva O]]
-
[[Category: Zhao, Y.]]
+
[[Category: Zhao Y]]
-
[[Category: aaa+ atpase]]
+
-
[[Category: clamp loader]]
+
-
[[Category: dna polymerase]]
+
-
[[Category: dna replication]]
+
-
[[Category: processivity clamp]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 18:29:03 2007''
+

Current revision

Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of the beta-delta complex

PDB ID 1jqj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1jqj"
Personal tools